Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0110mh_B_DC402_DC403AAAAA00100.53AA00
0210mh_B_DC403_DA404AAAAA02100.54AA02
0310mh_B_DA404_DT405BBBBB00140.34BB00
0410mh_B_DT405_DG406BB2BB07160.48BB07
0510mh_B_DG406_5CM407NANNANT00.81BA08
0610mh_B_5CM407_DG408NANNANT00.87AB03
0710mh_B_DG408_DC409BB2BB07210.57BB07
0810mh_B_DC409_DT410BBBBB00410.31BB00
0910mh_B_DT410_DG411BBBBB00700.19BB00
1010mh_B_DG411_DA412BBBBB00360.35BB00
1110mh_B_DA412_DC413miBBB13600.33BB13
1210mh_C_DG422_DT423A-BAB05420.35AB05
1310mh_C_DT423_DC424BBBBB00320.28BB00
1410mh_C_DC424_DA425BBBBB00530.32BB00
1510mh_C_DA425_DG426B12BB04540.27BB04
1610mh_C_DG426_5NC427NANNANT01.02OP17
1710mh_C_5NC427_DG428NANNANT01.43OP01
1810mh_C_DG428_DC429BBBBB00190.35BB00
1910mh_C_DC429_DA430BBBBB00510.34BB00
2010mh_C_DA430_DT431B12BB04750.34BB04
2110mh_C_DT431_DG432B-ABA08860.30BA08
2210mh_C_DG432_DG433A-BAB05670.40AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N