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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND HEMIMETHYLATED DNA CONTAINING 5,6-DIHYDRO-5-AZACYTOSINE AT THE TARGET

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0110mh_B_DC402_DC403AAAAA04270.58AA04
0210mh_B_DC403_DA404AAAAA02100.54AA02
0310mh_B_DA404_DT405BBBBB00140.30BB00
0410mh_B_DT405_DG406BB2BB07160.39BB07
0510mh_B_DG406_5CM407NANNANT00.81BA08
0610mh_B_5CM407_DG408NANNANT00.87AB03
0710mh_B_DG408_DC409BB2BB07210.50BB07
0810mh_B_DC409_DT410BBBBB00420.36BB00
0910mh_B_DT410_DG411BBBBB00700.21BB00
1010mh_B_DG411_DA412BBBBB00340.31BB00
1110mh_B_DA412_DC413miBBB13590.30BB13
1210mh_C_DG422_DT423A-BAB05420.39AB05
1310mh_C_DT423_DC424BBBBB00310.31BB00
1410mh_C_DC424_DA425BBBBB00530.34BB00
1510mh_C_DA425_DG426B12BB04540.30BB04
1610mh_C_DG426_5NC427NANNANT01.02OP17
1710mh_C_5NC427_DG428NANNANT01.07OP06
1810mh_C_DG428_DC429BBBBB00180.43BB00
1910mh_C_DC429_DA430BBBBB00470.30BB00
2010mh_C_DA430_DT431B12BB04750.29BB04
2110mh_C_DT431_DG432B-ABA08810.30BA08
2210mh_C_DG432_DG433A-BAB05670.35AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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