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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE AND STABILITY OF A DNA DUPLEX CONTAINING A(ANTI).G(SYN) BASE-PAIRS

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
01111d_A_DC1_DG2BBBBB00480.30BB00
02111d_A_DG2_DC3NANNANT00.37BA05
03111d_A_DC3_DA4A-BAB01190.20AB01
04111d_A_DA4_DA5B12BB04100.38BB04
05111d_A_DA5_DA6B12BB04190.50BB04
06111d_A_DA6_DT7B-ABA01750.20BA01
07111d_A_DT7_DT8NANNANT00.60AA02
08111d_A_DT8_DG9NANNANT00.64AB2S
09111d_A_DG9_DG10SYNBBS1510.23BBS1
10111d_A_DG10_DC11BB2BB07480.33BB07
11111d_A_DC11_DG12NANNANT00.58BB16
12111d_B_DC13_DG14miBBB10370.37BB10
13111d_B_DG14_DC15NANNANT00.22AB03
14111d_B_DC15_DA16NANNANT00.42AB03
15111d_B_DA16_DA17BBBBB00360.26BB00
16111d_B_DA17_DA18BBBBB00520.18BB00
17111d_B_DA18_DT19NANNANT00.64BA08
18111d_B_DT19_DT20NANNANT00.45AB03
19111d_B_DT20_DG21NANNANT00.65AB1S
20111d_B_DG21_DG22NANNANT00.37BBS1
21111d_B_DG22_DC23NANNANT00.36BB07
22111d_B_DC23_DG24B-ABA08710.30BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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