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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

THE STRUCTURE OF A MISPAIRED RNA DOUBLE HELIX AT 1.6 ANGSTROMS RESOLUTION AND IMPLICATIONS FOR THE PREDICTION OF RNA SECONDARY STRUCTURE

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
01165d_A_G1_C2AAAAA00850.17AA00
02165d_A_C2_U3AAAAA00740.20AA00
03165d_A_U3_U4AAuAA12890.21AA12
04165d_A_U4_C5AAAAA00810.18AA00
05165d_A_C5_G6AAAAA00670.26AA00
06165d_A_G6_G7AAAAA00670.27AA00
07165d_A_G7_C8AAAAA00790.27AA00
08165d_A_C8_BRU9NANNANT00.68OP29
09165d_B_G10_C11AAAAA00860.14AA00
10165d_B_C11_U12AAAAA00900.18AA00
11165d_B_U12_U13AAuAA12820.17AA12
12165d_B_U13_C14AAAAA00610.21AA00
13165d_B_C14_G15AAwAA01440.34AA01
14165d_B_G15_G16AAAAA08880.19AA08
15165d_B_G16_C17AAAAA00440.17AA00
16165d_B_C17_BRU.A18NANNANT00.56IC04
17165d_B_C17_BRU.B18NANNANT02.11ZZ2S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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