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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
HIV-2 TRANS ACTIVATING REGION RNA COMPLEX WITH ARGININAMIDE, NMR, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011akx_A_G16_G17AA1AA01860.18AA01
021akx_A_G17_C18AAAAA00760.17AA00
031akx_A_C18_C19AA1AA01890.15AA01
041akx_A_C19_A20AAAAA00800.18AA00
051akx_A_A20_G21AAAAA00600.20AA00
061akx_A_G21_A22AA1AA01300.35AA01
071akx_A_A22_U23NANNANT00.78IC03
081akx_A_U23_U25NANNANT01.32OP21
091akx_A_U25_G26NANNANT01.81OP19
101akx_A_G26_A27AA1AA01840.15AA01
111akx_A_A27_G28AAAAA00740.24AA00
121akx_A_G28_C29AAAAA00740.21AA00
131akx_A_C29_C30A-BAB05700.18AB05
141akx_A_C30_U31NANNANT01.15OP11
151akx_A_U31_G32NANNANT02.08OP19
161akx_A_G32_G33NANNANT00.79BB07
171akx_A_G33_G34NANNANT01.53IC03
181akx_A_G34_A35NANNANT01.39BB08
191akx_A_A35_G36NANNANT00.65BA16
201akx_A_G36_C37AAAAA08740.27AA08
211akx_A_C37_U38AAAAA00730.08AA00
221akx_A_U38_C39AA1AA01810.23AA01
231akx_A_C39_U40AAAAA08200.42AA08
241akx_A_U40_C41AAAAA00450.20AA00
251akx_A_C41_U42AAAAA04880.27AA04
261akx_A_U42_G43AAAAA04900.17AA04
271akx_A_G43_G44AA1AA01770.25AA01
281akx_A_G44_C45AAAAA00800.15AA00
291akx_A_C45_C46AAAAA08780.21AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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