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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP

Results of the assignment of 118 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0011asy_R_U601_C602AAAAA08770.27AA08
0021asy_R_C602_C603AAAAA08910.20AA08
0031asy_R_C603_G604AAAAA00660.19AA00
0041asy_R_G604_U605AAAAA08810.17AA08
0051asy_R_U605_G606AAAAA04560.34AA04
0061asy_R_G606_A607A-BAB05690.22AB05
0071asy_R_A607_U608NANNANT00.50OP11
0081asy_R_U608_A609NANNANT01.09IC04
0091asy_R_A609_G610NANNANT01.78OP04
0101asy_R_G610_U611AAAAA08520.25AA08
0111asy_R_U611_U612AAAAA03610.27AA03
0121asy_R_A614_A615AAAAA04590.36AA04
0131asy_R_G617_G618NANNANT00.96BB10
0141asy_R_C620_A621NANNANT01.08OP13
0151asy_R_A621_G622AA2AA13740.33AA13
0161asy_R_G622_A623AA1AA01780.16AA01
0171asy_R_A623_A624AAAAA00560.26AA00
0181asy_R_A624_U625AAAAA00140.27AA00
0191asy_R_U625_G626AAAAA04880.28AA04
0201asy_R_G626_G627AAAAA00540.17AA00
0211asy_R_G627_G628AAAAA00340.31AA00
0221asy_R_G628_C629NANNANT00.36AA09
0231asy_R_C629_G630NANNANT00.32AA01
0241asy_R_G630_C631AAAAA08740.27AA08
0251asy_R_U633_G634NANNANT01.86OP05
0261asy_R_G634_U635NANNANT01.17AA00
0271asy_R_U635_C636NANNANT00.47AA04
0281asy_R_C638_G639AAAAA00510.30AA00
0291asy_R_G639_U640AAAAA00770.19AA00
0301asy_R_U640_G641AA2AA12620.43AA12
0311asy_R_G641_C642NANNANT00.37AA10
0321asy_R_C642_C643AAAAA00640.18AA00
0331asy_R_C643_A644AAAAA00640.24AA00
0341asy_R_A644_G645AAAAA09670.48AA09
0351asy_R_G645_A646NANNANT00.48IC01
0361asy_R_A646_U648NANNANT00.68BB13
0371asy_R_G650_G651AAAAA00610.29AA00
0381asy_R_G651_G652AAAAA04760.23AA04
0391asy_R_G652_G653AAAAA08780.24AA08
0401asy_R_C656_A657AAAAA00170.46AA00
0411asy_R_A657_A658NANNANT00.60IC03
0421asy_R_A658_U659NANNANT00.69OP04
0431asy_R_U659_U660A-BAB01170.49AB01
0441asy_R_U660_C661NANNANT00.32OP12
0451asy_R_C661_C662AAAAA08580.37AA08
0461asy_R_C662_C663AAAAA00780.18AA00
0471asy_R_C663_C664AAAAA00950.14AA00
0481asy_R_C664_G665AAAAA00710.16AA00
0491asy_R_G665_U666AAAAA08840.16AA08
0501asy_R_U666_C667AAAAA08730.19AA08
0511asy_R_C667_G668AAAAA00550.24AA00
0521asy_R_G668_C669AAAAA00670.22AA00
0531asy_R_C669_G670AAAAA00800.17AA00
0541asy_R_G670_G671AAAAA04860.21AA04
0551asy_R_G671_A672AAAAA08490.29AA08
0561asy_R_A672_G673AAAAA08490.32AA08
0571asy_R_G673_C674AAAAA00350.26AA00
0581asy_R_C674_C675AA1AA10270.32AA10
0591asy_R_C675_A676NANNANT00.86OP04
0601asy_S_U601_C602AAAAA00470.25AA00
0611asy_S_C602_C603AAAAA00860.21AA00
0621asy_S_C603_G604AAAAA08700.23AA08
0631asy_S_G604_U605AAAAA08770.22AA08
0641asy_S_U605_G606AA1AA06890.18AA06
0651asy_S_G606_A607A-BAB05550.23AB05
0661asy_S_A607_U608OPNOP11840.28OP11
0671asy_S_U608_A609NANNANT01.09IC04
0681asy_S_A609_G610NANNANT01.24OP12
0691asy_S_G610_U611AAAAA04620.36AA04
0701asy_S_U611_U612AAAAA08550.35AA08
0711asy_S_A614_A615AAAAA04610.34AA04
0721asy_S_G617_G618NANNANT00.84BB11
0731asy_S_C620_A621OPNOP06320.49OP06
0741asy_S_A621_G622NANNANT00.59AA12
0751asy_S_G622_A623AAAAA04640.29AA04
0761asy_S_A623_A624AAAAA08890.17AA08
0771asy_S_A624_U625AAAAA00830.25AA00
0781asy_S_U625_G626AAAAA00640.18AA00
0791asy_S_G626_G627AAAAA08400.28AA08
0801asy_S_G627_G628AAAAA08540.30AA08
0811asy_S_G628_C629NANNANT00.46AA09
0821asy_S_C629_G630NANNANT00.21AA01
0831asy_S_G630_C631AAAAA03800.23AA03
0841asy_S_U633_G634NANNANT00.99OP02
0851asy_S_G634_U635NANNANT01.54AA04
0861asy_S_U635_C636AAAAA00540.34AA00
0871asy_S_C638_G639NANNANT00.46AA09
0881asy_S_G639_U640AAAAA04730.21AA04
0891asy_S_U640_G641AA2AA12550.47AA12
0901asy_S_G641_C642AAAAA08810.29AA08
0911asy_S_C642_C643AAAAA00870.13AA00
0921asy_S_C643_A644AAAAA00630.23AA00
0931asy_S_A644_G645AAAAA00450.24AA00
0941asy_S_G645_A646NANNANT00.95AA07
0951asy_S_A646_U648NANNANT00.61IC04
0961asy_S_G650_G651AAAAA00900.14AA00
0971asy_S_G651_G652AAAAA04850.23AA04
0981asy_S_G652_G653AAAAA00770.15AA00
0991asy_S_C656_A657AAAAA00460.30AA00
1001asy_S_A657_A658NANNANT00.60IC03
1011asy_S_A658_U659NANNANT00.91OP14
1021asy_S_U659_U660A-BAB05620.49AB05
1031asy_S_U660_C661NANNANT00.25OP12
1041asy_S_C661_C662AAAAA00440.33AA00
1051asy_S_C662_C663AA1AA01620.25AA01
1061asy_S_C663_C664AAAAA08660.30AA08
1071asy_S_C664_G665AAAAA00770.18AA00
1081asy_S_G665_U666AAAAA08780.22AA08
1091asy_S_U666_C667AAAAA08780.18AA08
1101asy_S_C667_G668AAAAA00350.23AA00
1111asy_S_G668_C669AAAAA08760.25AA08
1121asy_S_C669_G670AAAAA08730.31AA08
1131asy_S_G670_G671AAAAA08880.16AA08
1141asy_S_G671_A672AAAAA00840.15AA00
1151asy_S_A672_G673AAAAA00710.21AA00
1161asy_S_G673_C674AAAAA00700.20AA00
1171asy_S_C674_C675AAAAA08180.60AA08
1181asy_S_C675_A676NANNANT01.61OP06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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