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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011b69_B_DG101_DA102NANNANT00.64BB16
021b69_B_DA102_DG103BBBBB00510.25BB00
031b69_B_DG103_DT104BBBBB00200.35BB00
041b69_B_DT104_DA105BBBBB01470.26BB01
051b69_B_DA105_DG106BBBBB01640.22BB01
061b69_B_DG106_DT107NANNANT00.37AB03
071b69_B_DT107_DA108BB1BB17260.58BB17
081b69_B_DA108_DA109B-ABA05560.30BA05
091b69_B_DA109_DA110BBBBB01310.35BB01
101b69_B_DA110_DT111BBBBB01720.31BB01
111b69_B_DT111_DT112BBBBB01310.34BB01
121b69_B_DT112_DC113AAAAA0270.37AA02
131b69_C_DG114_DA115NANNANT00.44BB00
141b69_C_DA115_DA116B-ABA05730.32BA05
151b69_C_DA116_DT117BBBBB01640.24BB01
161b69_C_DT117_DT118BBBBB01250.42BB01
171b69_C_DT118_DT119BBBBB01290.31BB01
181b69_C_DT119_DA120NANNANT00.43BB17
191b69_C_DA120_DC121BBBBB00140.36BB00
201b69_C_DC121_DT122BBBBB01330.46BB01
211b69_C_DT122_DA123BBBBB00130.40BB00
221b69_C_DA123_DC124B-ABA05390.29BA05
231b69_C_DC124_DT125BBBBB01760.15BB01
241b69_C_DT125_DC126BBBBB0070.58BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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