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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

ANALYSIS OF A MUTATIONAL HOT-SPOT IN THE ECORV RESTRICTION ENDONUCLEASE: A CATALYTIC ROLE FOR A MAIN CHAIN CARBONYL GROUP

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011b96_C_DA1_DA2NANNANT00.37BBS1
021b96_C_DA2_DA3BBBBB00580.24BB00
031b96_C_DA3_DG4BBBBB00680.24BB00
041b96_C_DG4_DA5B-ABA16870.19BA16
051b96_C_DA5_DT6AAAAA00730.20AA00
061b96_C_DT6_DA7A-BAB05440.39AB05
071b96_C_DA7_DT8BBBBB01610.23BB01
081b96_C_DT8_DC9BBBBB01200.28BB01
091b96_C_DC9_DT10A-BAB03700.32AB03
101b96_C_DT10_DT11miBBB15350.34BB15
111b96_D_DA1_DA2NANNANT00.32BBS1
121b96_D_DA2_DA3B-ABA05650.25BA05
131b96_D_DA3_DG4A-BAB03440.24AB03
141b96_D_DG4_DA5B-ABA16920.18BA16
151b96_D_DA5_DT6AAAAA00380.23AA00
161b96_D_DT6_DA7A-BAB04710.12AB04
171b96_D_DA7_DT8BBBBB01520.22BB01
181b96_D_DT8_DC9B-ABA08320.47BA08
191b96_D_DC9_DT10NANNANT00.33AB03
201b96_D_DT10_DT11NANNANT00.40BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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