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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
NMR STRUCTURE OF THE DIMER INITIATION COMPLEX OF HIV-1 GENOMIC RNA, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011bau_A_G1_G2AAAAA00940.11AA00
021bau_A_G2_C3AAAAA00920.12AA00
031bau_A_C3_A4AAAAA00870.28AA00
041bau_A_A4_A5AAAAA00890.26AA00
051bau_A_A5_U6AAAAA00760.30AA00
061bau_A_U6_G7A-BAB05460.57AB05
071bau_A_G7_A8NANNANT00.62OP12
081bau_A_A8_A9NANNANT00.91OP04
091bau_A_A9_G10AA2AA12490.42AA12
101bau_A_G10_C11AAAAA00100.49AA00
111bau_A_C11_G12AAAAA00150.42AA00
121bau_A_G12_C13AAAAA08120.51AA08
131bau_A_C13_G14AAAAA00470.53AA00
141bau_A_G14_C15AAAAA00730.14AA00
151bau_A_C15_A16AAAAA04310.53AA04
161bau_A_A16_C17AA2AA12510.33AA12
171bau_A_C17_G18AAAAA00420.26AA00
181bau_A_G18_U19AAAAA00840.24AA00
191bau_A_U19_U20AAAAA00880.20AA00
201bau_A_U20_G21AAAAA00760.32AA00
211bau_A_G21_C22AAAAA00540.25AA00
221bau_A_C22_C23AAAAA00380.24AA00
231bau_B_G1_G2AAAAA00940.11AA00
241bau_B_G2_C3AAAAA00920.12AA00
251bau_B_C3_A4AAAAA00870.28AA00
261bau_B_A4_A5AAAAA00890.26AA00
271bau_B_A5_U6AAAAA00760.30AA00
281bau_B_U6_G7A-BAB05460.57AB05
291bau_B_G7_A8NANNANT00.62OP12
301bau_B_A8_A9NANNANT00.91OP04
311bau_B_A9_G10AA2AA12490.42AA12
321bau_B_G10_C11AAAAA00100.49AA00
331bau_B_C11_G12AAAAA00150.42AA00
341bau_B_G12_C13AAAAA08120.51AA08
351bau_B_C13_G14AAAAA00460.53AA00
361bau_B_G14_C15AAAAA00730.14AA00
371bau_B_C15_A16AAAAA04310.53AA04
381bau_B_A16_C17AA2AA12510.33AA12
391bau_B_C17_G18AAAAA00420.26AA00
401bau_B_G18_U19AAAAA00840.24AA00
411bau_B_U19_U20AAAAA00880.20AA00
421bau_B_U20_G21AAAAA00760.32AA00
431bau_B_G21_C22AAAAA00540.25AA00
441bau_B_C22_C23AAAAA00380.24AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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