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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
DETERMINATION OF INTERNUCLEAR ANGLES OF DNA USING PARAMAGNETIC ASSISTED MAGNETIC ALIGNMENT

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011bub_A_DG1_DG2NANNANT00.37AAS1
021bub_A_DG2_DT3NANNANT02.07OP20
031bub_A_DT3_DT4NANNANT02.37OP05
041bub_A_DT4_DG5NANNANT00.59AB1S
051bub_A_DG5_DG6NANNANT00.76AB02
061bub_A_DG6_DT7NANNANT01.32BB02
071bub_A_DT7_DG8NANNANT01.78BA10
081bub_A_DG8_DT9NANNANT01.87IC01
091bub_A_DT9_DG10NANNANT01.26BB03
101bub_A_DG10_DG11NANNANT00.54BBS1
111bub_A_DG11_DT12NANNANT02.46OP09
121bub_A_DT12_DT13NANNANT01.83OP21
131bub_A_DT13_DG14NANNANT00.91AB2S
141bub_A_DG14_DG15NANNANT00.54AB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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