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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
STRUCTURE AND MECHANISM OF THE HOMODIMERIC ASSEMBLY OF THE RXR ON DNA

Results of the assignment of 57 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011by4_E_DT1495_DA1496NANNANT00.81BB03
021by4_E_DA1496_DG1497NANNANT00.58BB15
031by4_E_DG1497_DG1498B12BB05800.21BB05
041by4_E_DG1498_DT1499BBBBB00250.38BB00
051by4_E_DT1499_DC1500NANNANT00.46BB10
061by4_E_DC1500_DA1501NANNANT00.66BB08
071by4_E_DA1501_DA1502B12BB04280.56BB04
081by4_E_DA1502_DA1503miBBB10510.29BB10
091by4_E_DA1503_DG1504NANNANT00.44BA08
101by4_E_DG1504_DG1505AAAAA00300.27AA00
111by4_E_DG1505_DT1506NANNANT00.55AB03
121by4_E_DT1506_DC1507miBBB15420.41BB15
131by4_E_DC1507_DA1508NANNANT00.65BB08
141by4_E_DA1508_DG1509BB1BB02260.25BB02
151by4_F_DC1531_DT1532BB1BB02540.56BB02
161by4_F_DT1532_DG1533BBBBB00460.51BB00
171by4_F_DG1533_DA1534BB2BB07740.21BB07
181by4_F_DA1534_DC1535BB1BB02400.31BB02
191by4_F_DC1535_DC1536BB1BB17580.22BB17
201by4_F_DC1536_DT1537BBBBB00460.39BB00
211by4_F_DT1537_DT1538BB1BB02670.21BB02
221by4_F_DT1538_DT1539BBBBB00440.30BB00
231by4_F_DT1539_DG1540NANNANT00.59BB08
241by4_F_DG1540_DA1541NANNANT00.47BA17
251by4_F_DA1541_DC1542BB1BB02820.19BB02
261by4_F_DC1542_DC1543miBBB15710.22BB15
271by4_F_DC1543_DT1544BBBBB00740.25BB00
281by4_F_DT1544_DA1545BBBBB00420.42BB00
291by4_G_DC2494_DT2495NANNANT00.95BB03
301by4_G_DT2495_DA2496NANNANT00.80BB02
311by4_G_DA2496_DG2497NANNANT00.87BB11
321by4_G_DG2497_DG2498BB1BB11450.40BB11
331by4_G_DG2498_DT2499NANNANT00.56BB15
341by4_G_DT2499_DC2500NANNANT00.82BB07
351by4_G_DC2500_DA2501NANNANT00.45BB08
361by4_G_DA2501_DA2502BBBBB00190.58BB00
371by4_G_DA2502_DA2503miBBB10240.37BB10
381by4_G_DA2503_DG2504NANNANT00.43BA08
391by4_G_DG2504_DG2505A-BAB01610.29AB01
401by4_G_DG2505_DT2506NANNANT00.42BB02
411by4_G_DT2506_DC2507NANNANT00.50BB10
421by4_G_DC2507_DA2508NANNANT00.50BB08
431by4_G_DA2508_DG2509BB1BB02430.35BB02
441by4_H_DC2531_DT2532BBBBB01610.43BB01
451by4_H_DT2532_DG2533BBBBB00560.39BB00
461by4_H_DG2533_DA2534BB2BB07720.20BB07
471by4_H_DA2534_DC2535BB2BB08180.52BB08
481by4_H_DC2535_DC2536NANNANT00.61BB02
491by4_H_DC2536_DT2537BB1BB03370.45BB03
501by4_H_DT2537_DT2538BB1BB02510.34BB02
511by4_H_DT2538_DT2539BBBBB00640.30BB00
521by4_H_DT2539_DG2540BBBBB00760.34BB00
531by4_H_DG2540_DA2541BB2BB07640.27BB07
541by4_H_DA2541_DC2542B-ABA01670.22BA01
551by4_H_DC2542_DC2543NANNANT00.36BB15
561by4_H_DC2543_DT2544B12BB04760.21BB04
571by4_H_DT2544_DA2545miBBB10500.35BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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