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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
STABILIZATION OF THE ANTICODON STEM-LOOP OF TRNALYS,3 BY AN A+C BASE PAIR AND BY PSEUDOURIDINE, NMR, 1 STRUCTURE

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011bz3_A_U27_C28AAAAA00750.13AA00
021bz3_A_C28_A29AAAAA00760.17AA00
031bz3_A_A29_G30AAAAA00720.13AA00
041bz3_A_G30_A31AAAAA00730.19AA00
051bz3_A_A31_C32AAAAA00570.16AA00
061bz3_A_C32_U33NANNANT00.49AA04
071bz3_A_U33_U34NANNANT00.83OP09
081bz3_A_U34_U35OPNOP20100.69OP20
091bz3_A_U35_U36NANNANT01.05IC03
101bz3_A_U36_A37NANNANT01.36OP11
111bz3_A_A37_A38AAAAA00410.33AA00
121bz3_A_A38_U39AAAAA00530.18AA00
131bz3_A_U39_C40AAAAA00650.20AA00
141bz3_A_C40_U41AAAAA00530.24AA00
151bz3_A_U41_G42AAAAA00270.30AA00
161bz3_A_G42_A43AAAAA00670.23AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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