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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
SOLUTION STRUCTURE OF THE P5 HAIRPIN FROM A GROUP I INTRON COMPLEXED WITH COBALT (III) HEXAMMINE, NMR, 19 CONVERGED STRUCTURES

Results of the assignment of 247 detected steps in 19 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0011c0o-m10_A_G1_G2AAAAA00720.27AA00
0021c0o-m11_A_G1_G2AAAAA00760.28AA00
0031c0o-m12_A_G1_G2AAAAA00670.34AA00
0041c0o-m13_A_G1_G2AAAAA00580.37AA00
0051c0o-m14_A_G1_G2AAAAA00630.37AA00
0061c0o-m15_A_G1_G2AAAAA00720.28AA00
0071c0o-m16_A_G1_G2AAAAA00680.35AA00
0081c0o-m17_A_G1_G2AAAAA00330.41AA00
0091c0o-m18_A_G1_G2AAAAA00660.34AA00
0101c0o-m19_A_G1_G2AAAAA00630.31AA00
0111c0o-m1_A_G1_G2AAAAA00570.39AA00
0121c0o-m2_A_G1_G2AAAAA00700.30AA00
0131c0o-m3_A_G1_G2AAAAA08440.40AA08
0141c0o-m4_A_G1_G2AAAAA00730.28AA00
0151c0o-m5_A_G1_G2AAAAA00540.40AA00
0161c0o-m6_A_G1_G2AAAAA00560.35AA00
0171c0o-m7_A_G1_G2AAAAA00640.36AA00
0181c0o-m8_A_G1_G2AAAAA00710.33AA00
0191c0o-m9_A_G1_G2AAAAA08480.32AA08
0201c0o-m10_A_G2_G3AAAAA00770.10AA00
0211c0o-m11_A_G2_G3AAAAA00680.19AA00
0221c0o-m12_A_G2_G3AAAAA00720.17AA00
0231c0o-m13_A_G2_G3AAAAA00760.17AA00
0241c0o-m14_A_G2_G3AAAAA00690.18AA00
0251c0o-m15_A_G2_G3AAAAA00830.11AA00
0261c0o-m16_A_G2_G3AAAAA00740.17AA00
0271c0o-m17_A_G2_G3AAAAA00690.13AA00
0281c0o-m18_A_G2_G3AAAAA00710.15AA00
0291c0o-m19_A_G2_G3AAAAA00790.14AA00
0301c0o-m1_A_G2_G3AAAAA00720.10AA00
0311c0o-m2_A_G2_G3AAAAA00770.13AA00
0321c0o-m3_A_G2_G3AAAAA00810.10AA00
0331c0o-m4_A_G2_G3AAAAA00620.13AA00
0341c0o-m5_A_G2_G3AAAAA00780.12AA00
0351c0o-m6_A_G2_G3AAAAA00710.11AA00
0361c0o-m7_A_G2_G3AAAAA00620.21AA00
0371c0o-m8_A_G2_G3AAAAA00680.14AA00
0381c0o-m9_A_G2_G3AAAAA00740.11AA00
0391c0o-m10_A_G3_U4AAAAA00290.37AA00
0401c0o-m11_A_G3_U4AAAAA00330.33AA00
0411c0o-m12_A_G3_U4AAAAA00300.34AA00
0421c0o-m13_A_G3_U4AAAAA00340.36AA00
0431c0o-m14_A_G3_U4AAAAA00440.31AA00
0441c0o-m15_A_G3_U4AAAAA00340.33AA00
0451c0o-m16_A_G3_U4AAAAA00280.36AA00
0461c0o-m17_A_G3_U4AAAAA00350.38AA00
0471c0o-m18_A_G3_U4AAAAA00350.33AA00
0481c0o-m19_A_G3_U4AAAAA00310.36AA00
0491c0o-m1_A_G3_U4AAAAA00350.34AA00
0501c0o-m2_A_G3_U4AAAAA00340.34AA00
0511c0o-m3_A_G3_U4AAAAA00290.35AA00
0521c0o-m4_A_G3_U4AAAAA00310.34AA00
0531c0o-m5_A_G3_U4AAAAA00480.30AA00
0541c0o-m6_A_G3_U4AAAAA00380.33AA00
0551c0o-m7_A_G3_U4AAAAA00410.32AA00
0561c0o-m8_A_G3_U4AAAAA00380.30AA00
0571c0o-m9_A_G3_U4AAAAA00390.33AA00
0581c0o-m10_A_U4_C5AAAAA00380.34AA00
0591c0o-m11_A_U4_C5AAAAA00590.32AA00
0601c0o-m12_A_U4_C5AAAAA00480.36AA00
0611c0o-m13_A_U4_C5AAAAA08440.46AA08
0621c0o-m14_A_U4_C5AAAAA00200.37AA00
0631c0o-m15_A_U4_C5AAAAA00520.34AA00
0641c0o-m16_A_U4_C5AAAAA08480.45AA08
0651c0o-m17_A_U4_C5AAAAA00220.52AA00
0661c0o-m18_A_U4_C5AAAAA00490.36AA00
0671c0o-m19_A_U4_C5AAAAA00270.39AA00
0681c0o-m1_A_U4_C5AAAAA00530.37AA00
0691c0o-m2_A_U4_C5AAAAA00500.36AA00
0701c0o-m3_A_U4_C5AAAAA00390.46AA00
0711c0o-m4_A_U4_C5AAAAA00410.36AA00
0721c0o-m5_A_U4_C5AAAAA00490.34AA00
0731c0o-m6_A_U4_C5AAAAA00300.42AA00
0741c0o-m7_A_U4_C5AAAAA00630.30AA00
0751c0o-m8_A_U4_C5AAAAA00500.34AA00
0761c0o-m9_A_U4_C5AAAAA00470.35AA00
0771c0o-m10_A_C5_U6AAAAA00600.24AA00
0781c0o-m11_A_C5_U6AAAAA00570.26AA00
0791c0o-m12_A_C5_U6AAAAA00680.19AA00
0801c0o-m13_A_C5_U6AAAAA00610.24AA00
0811c0o-m14_A_C5_U6AAAAA00610.25AA00
0821c0o-m15_A_C5_U6AAAAA00640.27AA00
0831c0o-m16_A_C5_U6AAAAA00530.29AA00
0841c0o-m17_A_C5_U6AAAAA00530.30AA00
0851c0o-m18_A_C5_U6AAAAA00570.29AA00
0861c0o-m19_A_C5_U6AAAAA00630.24AA00
0871c0o-m1_A_C5_U6AAAAA00630.26AA00
0881c0o-m2_A_C5_U6AAAAA00680.22AA00
0891c0o-m3_A_C5_U6AAAAA00620.27AA00
0901c0o-m4_A_C5_U6AAAAA00640.23AA00
0911c0o-m5_A_C5_U6AAAAA00540.28AA00
0921c0o-m6_A_C5_U6AAAAA00630.24AA00
0931c0o-m7_A_C5_U6AAAAA00640.26AA00
0941c0o-m8_A_C5_U6AAAAA00630.26AA00
0951c0o-m9_A_C5_U6AAAAA00570.26AA00
0961c0o-m10_A_U6_U7OPNOP09400.26OP09
0971c0o-m11_A_U6_U7OPNOP09530.29OP09
0981c0o-m12_A_U6_U7OPNOP09450.32OP09
0991c0o-m13_A_U6_U7NANNANT00.45OP09
1001c0o-m14_A_U6_U7OPNOP09510.24OP09
1011c0o-m15_A_U6_U7OPNOP09220.34OP09
1021c0o-m16_A_U6_U7OPNOP09240.36OP09
1031c0o-m17_A_U6_U7OPNOP09300.28OP09
1041c0o-m18_A_U6_U7OPNOP09140.39OP09
1051c0o-m19_A_U6_U7OPNOP09510.25OP09
1061c0o-m1_A_U6_U7OPNOP09160.34OP09
1071c0o-m2_A_U6_U7NANNANT00.40OP09
1081c0o-m3_A_U6_U7OPNOP09230.32OP09
1091c0o-m4_A_U6_U7OPNOP09310.30OP09
1101c0o-m5_A_U6_U7OPNOP09240.33OP09
1111c0o-m6_A_U6_U7OPNOP09270.27OP09
1121c0o-m7_A_U6_U7OPNOP09360.29OP09
1131c0o-m8_A_U6_U7OPNOP09200.31OP09
1141c0o-m9_A_U6_U7OPNOP09340.29OP09
1151c0o-m10_A_U7_C8OPNOP20160.73OP20
1161c0o-m11_A_U7_C8NANNANT00.73OP20
1171c0o-m12_A_U7_C8NANNANT00.73OP20
1181c0o-m13_A_U7_C8NANNANT00.86OP20
1191c0o-m14_A_U7_C8OPNOP20180.71OP20
1201c0o-m15_A_U7_C8NANNANT00.82OP20
1211c0o-m16_A_U7_C8NANNANT00.76OP20
1221c0o-m17_A_U7_C8NANNANT00.74OP20
1231c0o-m18_A_U7_C8NANNANT00.79OP20
1241c0o-m19_A_U7_C8OPNOP20210.69OP20
1251c0o-m1_A_U7_C8NANNANT00.79OP20
1261c0o-m2_A_U7_C8NANNANT00.82OP20
1271c0o-m3_A_U7_C8OPNOP20100.77OP20
1281c0o-m4_A_U7_C8OPNOP20160.73OP20
1291c0o-m5_A_U7_C8OPNOP20100.78OP20
1301c0o-m6_A_U7_C8OPNOP20170.71OP20
1311c0o-m7_A_U7_C8NANNANT00.77OP20
1321c0o-m8_A_U7_C8OPNOP20120.76OP20
1331c0o-m9_A_U7_C8OPNOP20120.76OP20
1341c0o-m10_A_C8_G9NANNANT01.61OP10
1351c0o-m11_A_C8_G9NANNANT01.63OP10
1361c0o-m12_A_C8_G9NANNANT01.64OP10
1371c0o-m13_A_C8_G9NANNANT01.64OP10
1381c0o-m14_A_C8_G9NANNANT01.58OP10
1391c0o-m15_A_C8_G9NANNANT01.60OP10
1401c0o-m16_A_C8_G9NANNANT01.63OP10
1411c0o-m17_A_C8_G9NANNANT01.62OP10
1421c0o-m18_A_C8_G9NANNANT01.61OP10
1431c0o-m19_A_C8_G9NANNANT01.62OP10
1441c0o-m1_A_C8_G9NANNANT01.62OP10
1451c0o-m2_A_C8_G9NANNANT01.63OP10
1461c0o-m3_A_C8_G9NANNANT01.61OP10
1471c0o-m4_A_C8_G9NANNANT01.63OP10
1481c0o-m5_A_C8_G9NANNANT01.63OP10
1491c0o-m6_A_C8_G9NANNANT01.62OP10
1501c0o-m7_A_C8_G9NANNANT01.60OP10
1511c0o-m8_A_C8_G9NANNANT01.61OP10
1521c0o-m9_A_C8_G9NANNANT01.61OP10
1531c0o-m10_A_G9_G10NANNANT00.60AAS1
1541c0o-m11_A_G9_G10NANNANT00.62AAS1
1551c0o-m12_A_G9_G10NANNANT00.65AAS1
1561c0o-m13_A_G9_G10NANNANT00.62AAS1
1571c0o-m14_A_G9_G10NANNANT00.60AAS1
1581c0o-m15_A_G9_G10NANNANT00.60AAS1
1591c0o-m16_A_G9_G10NANNANT00.64AAS1
1601c0o-m17_A_G9_G10NANNANT00.61AAS1
1611c0o-m18_A_G9_G10NANNANT00.61AAS1
1621c0o-m19_A_G9_G10NANNANT00.60AAS1
1631c0o-m1_A_G9_G10NANNANT00.61AAS1
1641c0o-m2_A_G9_G10NANNANT00.62AAS1
1651c0o-m3_A_G9_G10NANNANT00.61AAS1
1661c0o-m4_A_G9_G10NANNANT00.61AAS1
1671c0o-m5_A_G9_G10NANNANT00.60AAS1
1681c0o-m6_A_G9_G10NANNANT00.61AAS1
1691c0o-m7_A_G9_G10NANNANT00.61AAS1
1701c0o-m8_A_G9_G10NANNANT00.60AAS1
1711c0o-m9_A_G9_G10NANNANT00.59AAS1
1721c0o-m10_A_G10_G11AAAAA00620.17AA00
1731c0o-m11_A_G10_G11AAAAA00530.26AA00
1741c0o-m12_A_G10_G11AAAAA00400.31AA00
1751c0o-m13_A_G10_G11AAAAA00680.17AA00
1761c0o-m14_A_G10_G11AAAAA00480.27AA00
1771c0o-m15_A_G10_G11AAAAA00640.23AA00
1781c0o-m16_A_G10_G11AAAAA00600.15AA00
1791c0o-m17_A_G10_G11AAAAA00580.17AA00
1801c0o-m18_A_G10_G11AAAAA00510.26AA00
1811c0o-m19_A_G10_G11AAAAA00610.16AA00
1821c0o-m1_A_G10_G11AAAAA00630.20AA00
1831c0o-m2_A_G10_G11AAAAA00480.27AA00
1841c0o-m3_A_G10_G11AAAAA00640.19AA00
1851c0o-m4_A_G10_G11AAAAA00490.27AA00
1861c0o-m5_A_G10_G11AAAAA00520.27AA00
1871c0o-m6_A_G10_G11AAAAA00630.18AA00
1881c0o-m7_A_G10_G11AAAAA00480.28AA00
1891c0o-m8_A_G10_G11AAAAA00590.26AA00
1901c0o-m9_A_G10_G11AAAAA00530.25AA00
1911c0o-m10_A_G11_U12AAAAA00320.34AA00
1921c0o-m11_A_G11_U12AAAAA00170.42AA00
1931c0o-m12_A_G11_U12AAAAA00240.34AA00
1941c0o-m13_A_G11_U12AAAAA00330.34AA00
1951c0o-m14_A_G11_U12NANNANT00.41AA00
1961c0o-m15_A_G11_U12AAAAA00260.40AA00
1971c0o-m16_A_G11_U12AAAAA00360.32AA00
1981c0o-m17_A_G11_U12AAAAA00410.34AA00
1991c0o-m18_A_G11_U12AAAAA00150.44AA00
2001c0o-m19_A_G11_U12AAAAA00210.34AA00
2011c0o-m1_A_G11_U12AAAAA00230.37AA00
2021c0o-m2_A_G11_U12AAAAA00280.35AA00
2031c0o-m3_A_G11_U12AAAAA00330.34AA00
2041c0o-m4_A_G11_U12AAAAA00270.36AA00
2051c0o-m5_A_G11_U12AAAAA08360.35AA08
2061c0o-m6_A_G11_U12AAAAA00360.34AA00
2071c0o-m7_A_G11_U12AAAAA00240.41AA00
2081c0o-m8_A_G11_U12AAAAA00140.46AA00
2091c0o-m9_A_G11_U12AAAAA00200.38AA00
2101c0o-m10_A_U12_C13AAAAA08470.42AA08
2111c0o-m11_A_U12_C13AAAAA08430.47AA08
2121c0o-m12_A_U12_C13AAAAA00570.38AA00
2131c0o-m13_A_U12_C13AAAAA08460.39AA08
2141c0o-m14_A_U12_C13AAAAA08370.49AA08
2151c0o-m15_A_U12_C13AAAAA08430.45AA08
2161c0o-m16_A_U12_C13AAAAA00420.45AA00
2171c0o-m17_A_U12_C13AAAAA00420.47AA00
2181c0o-m18_A_U12_C13AAAAA08230.59AA08
2191c0o-m19_A_U12_C13AAAAA00500.41AA00
2201c0o-m1_A_U12_C13AAAAA00410.46AA00
2211c0o-m2_A_U12_C13AAAAA00440.41AA00
2221c0o-m3_A_U12_C13AAAAA00510.41AA00
2231c0o-m4_A_U12_C13AAAAA08570.35AA08
2241c0o-m5_A_U12_C13AAAAA08320.53AA08
2251c0o-m6_A_U12_C13AAAAA00560.38AA00
2261c0o-m7_A_U12_C13AAAAA08430.43AA08
2271c0o-m8_A_U12_C13AAAAA08300.53AA08
2281c0o-m9_A_U12_C13AAAAA00220.55AA00
2291c0o-m10_A_C13_C14AAAAA08590.30AA08
2301c0o-m11_A_C13_C14AAAAA08620.31AA08
2311c0o-m12_A_C13_C14AAAAA08560.43AA08
2321c0o-m13_A_C13_C14AAAAA09680.33AA09
2331c0o-m14_A_C13_C14AAAAA08420.42AA08
2341c0o-m15_A_C13_C14AAAAA08390.44AA08
2351c0o-m16_A_C13_C14AAAAA08450.46AA08
2361c0o-m17_A_C13_C14AAAAA08530.32AA08
2371c0o-m18_A_C13_C14AAAAA08470.41AA08
2381c0o-m19_A_C13_C14AAAAA08500.44AA08
2391c0o-m1_A_C13_C14AAAAA08490.40AA08
2401c0o-m2_A_C13_C14AAAAA08590.36AA08
2411c0o-m3_A_C13_C14AAAAA08510.51AA08
2421c0o-m4_A_C13_C14AAAAA08550.37AA08
2431c0o-m5_A_C13_C14AAAAA08510.34AA08
2441c0o-m6_A_C13_C14AAAAA08520.38AA08
2451c0o-m7_A_C13_C14AAAAA08380.46AA08
2461c0o-m8_A_C13_C14AAAAA08600.37AA08
2471c0o-m9_A_C13_C14AAAAA09660.34AA09

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N