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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA DODECAMER C-G-C-G-A-A-T-T-C-G-C-G/HOECHST 33258 COMPLEX:-25 DEGREES C, PIPERAZINE DOWN

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011d45_A_DC1_DG2BBBBB00350.47BB00
021d45_A_DG2_DC3B-ABA01190.28BA01
031d45_A_DC3_DG4A-BAB01600.18AB01
041d45_A_DG4_DA5BBBBB00850.25BB00
051d45_A_DA5_DA6BBBBB00490.21BB00
061d45_A_DA6_DT7B-ABA05610.26BA05
071d45_A_DT7_DT8NANNANT00.56AA00
081d45_A_DT8_DC9NANNANT00.34AB01
091d45_A_DC9_DG10NANNANT00.38BB10
101d45_A_DG10_DC11NANNANT00.52BB07
111d45_A_DC11_DG12BBBBB00150.34BB00
121d45_B_DC13_DG14BB2BB07390.29BB07
131d45_B_DG14_DC15B-ABA05560.35BA05
141d45_B_DC15_DG16A-BAB03600.40AB03
151d45_B_DG16_DA17B12BB04240.28BB04
161d45_B_DA17_DA18BBBBB00610.36BB00
171d45_B_DA18_DT19B-ABA08670.46BA08
181d45_B_DT19_DT20AAAAA02490.60AA02
191d45_B_DT20_DC21NANNANT00.25BB01
201d45_B_DC21_DG22BBBBB00140.41BB00
211d45_B_DG22_DC23B-ABA17560.40BA17
221d45_B_DC23_DG24AAAAA04440.26AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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