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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
MOLECULAR STRUCTURE OF R(GCG)D(TATACGC): A DNA-RNA HYBRID HELIX JOINED TO DOUBLE HELICAL DNA

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011d96_A_G1_C2AAAAA03850.25AA03
021d96_A_C2_G3AAAAA04860.31AA04
031d96_A_G3_DT4AAAAA03400.24AA03
041d96_A_DT4_DA5AAAAA04700.32AA04
051d96_A_DA5_DT6AAAAA00770.13AA00
061d96_A_DT6_DA7AAAAA00690.24AA00
071d96_A_DA7_DC8AAAAA04750.35AA04
081d96_A_DC8_DG9AAAAA00810.25AA00
091d96_A_DG9_DC10AAAAA00680.21AA00
101d96_B_G11_C12AAAAA04290.46AA04
111d96_B_C12_G13AAAAA08780.26AA08
121d96_B_G13_DT14AAAAA08760.29AA08
131d96_B_DT14_DA15AAAAA04760.29AA04
141d96_B_DA15_DT16AAAAA00590.27AA00
151d96_B_DT16_DA17AAAAA04790.32AA04
161d96_B_DA17_DC18AAAAA03800.16AA03
171d96_B_DC18_DG19AAAAA04690.22AA04
181d96_B_DG19_DC20AAAAA03530.29AA03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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