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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS FOR CREB FAIMLY SELECTIVE DIMERIZATION AND DNA BINDING

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011dh3_B_DC-11_DC-10NANNANT00.67AB02
021dh3_B_DC-10_DT-9NANNANT00.55BB13
031dh3_B_DT-9_DT-8NANNANT00.57BA10
041dh3_B_DT-8_DG-7NANNANT00.47AB03
051dh3_B_DG-7_DG-6BB2BB07400.25BB07
061dh3_B_DG-6_DC-5NANNANT00.38BB15
071dh3_B_DC-5_DT-4NANNANT00.31BB00
081dh3_B_DT-4_DG-3NANNANT00.45BB11
091dh3_B_DG-3_DA-2BBBBB01290.41BB01
101dh3_B_DA-2_DC-1B-ABA05440.34BA05
111dh3_B_DC-1_DG1A-BAB03680.21AB03
121dh3_B_DG1_DT2BBBBB00290.25BB00
131dh3_B_DT2_DC3BBBBB00290.31BB00
141dh3_B_DC3_DA4BBwBB02300.31BB02
151dh3_B_DA4_DG5NANNANT00.56BA08
161dh3_B_DG5_DC6NANNANT00.58AB01
171dh3_B_DC6_DC7NANNANT00.44BB14
181dh3_B_DC7_DA8NANNANT00.75AB02
191dh3_B_DA8_DA9NANNANT00.59BB17
201dh3_B_DA9_DG10NANNANT01.36BB03
211dh3_D_DC-11_DC-10NANNANT00.88BB11
221dh3_D_DC-10_DT-9NANNANT00.91AB02
231dh3_D_DT-9_DT-8NANNANT00.64AB02
241dh3_D_DT-8_DG-7NANNANT00.62BB04
251dh3_D_DG-7_DG-6NANNANT00.60BB00
261dh3_D_DG-6_DC-5miBBB15630.25BB15
271dh3_D_DC-5_DT-4BBBBB00330.33BB00
281dh3_D_DT-4_DG-3B12BB0490.29BB04
291dh3_D_DG-3_DA-2B12BB04140.44BB04
301dh3_D_DA-2_DC-1B-ABA0580.32BA05
311dh3_D_DC-1_DG1NANNANT00.41AA04
321dh3_D_DG1_DT2BBBBB00320.29BB00
331dh3_D_DT2_DC3BBBBB00180.23BB00
341dh3_D_DC3_DA4B12BB04170.30BB04
351dh3_D_DA4_DG5BBBBB01170.28BB01
361dh3_D_DG5_DC6NANNANT00.49BA05
371dh3_D_DC6_DC7NANNANT00.54AB02
381dh3_D_DC7_DA8NANNANT00.54AB02
391dh3_D_DA8_DA9NANNANT00.41BB10
401dh3_D_DA9_DG10NANNANT00.50BA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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