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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
CRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS FOR CREB FAIMLY SELECTIVE DIMERIZATION AND DNA BINDING

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011dh3_B_DC-11_DC-10NANNANT00.67AB02
021dh3_B_DC-10_DT-9NANNANT00.56BB13
031dh3_B_DT-9_DT-8NANNANT00.52BA10
041dh3_B_DT-8_DG-7NANNANT00.47AB03
051dh3_B_DG-7_DG-6BB2BB07400.31BB07
061dh3_B_DG-6_DC-5NANNANT00.38BB15
071dh3_B_DC-5_DT-4NANNANT00.35BB00
081dh3_B_DT-4_DG-3NANNANT00.34BB11
091dh3_B_DG-3_DA-2BBBBB01290.41BB01
101dh3_B_DA-2_DC-1B-ABA05440.23BA05
111dh3_B_DC-1_DG1A-BAB03820.21AB03
121dh3_B_DG1_DT2BBBBB00290.20BB00
131dh3_B_DT2_DC3BBBBB00310.33BB00
141dh3_B_DC3_DA4BB1BB02300.31BB02
151dh3_B_DA4_DG5NANNANT00.56BA08
161dh3_B_DG5_DC6NANNANT00.54BB00
171dh3_B_DC6_DC7NANNANT00.53BB14
181dh3_B_DC7_DA8NANNANT00.75AB02
191dh3_B_DA8_DA9NANNANT00.51BB17
201dh3_B_DA9_DG10NANNANT01.36BB03
211dh3_D_DC-11_DC-10NANNANT01.08AB02
221dh3_D_DC-10_DT-9NANNANT00.91AB02
231dh3_D_DT-9_DT-8NANNANT00.64AB02
241dh3_D_DT-8_DG-7NANNANT00.62BB04
251dh3_D_DG-7_DG-6NANNANT00.64BB00
261dh3_D_DG-6_DC-5miBBB15680.25BB15
271dh3_D_DC-5_DT-4BBBBB00330.40BB00
281dh3_D_DT-4_DG-3B12BB0490.28BB04
291dh3_D_DG-3_DA-2B12BB04140.39BB04
301dh3_D_DA-2_DC-1B-ABA0590.25BA05
311dh3_D_DC-1_DG1NANNANT00.43AA04
321dh3_D_DG1_DT2BBBBB00320.26BB00
331dh3_D_DT2_DC3BBBBB00190.27BB00
341dh3_D_DC3_DA4B12BB04170.32BB04
351dh3_D_DA4_DG5BBBBB01170.28BB01
361dh3_D_DG5_DC6NANNANT00.48BA05
371dh3_D_DC6_DC7NANNANT00.54AB02
381dh3_D_DC7_DA8NANNANT00.54AB02
391dh3_D_DA8_DA9NANNANT00.46BB10
401dh3_D_DA9_DG10NANNANT00.43BA10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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