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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
DETAILED VIEW OF A KEY ELEMENT OF THE RIBOSOME ASSEMBLY: CRYSTAL STRUCTURE OF THE S15-RRNA COMPLEX

Results of the assignment of 58 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011dk1_B_G1_G2AAAAA08780.31AA08
021dk1_B_G2_G3AAAAA08820.23AA08
031dk1_B_G3_C4AAAAA08820.25AA08
041dk1_B_C4_G5NANNANT00.26AA10
051dk1_B_G5_G6NANNANT00.87IC03
061dk1_B_G6_C7AAAAA00730.26AA00
071dk1_B_C7_C8AAAAA00890.15AA00
081dk1_B_C8_U9AAAAA00750.23AA00
091dk1_B_U9_U10NANNANT00.24OP09
101dk1_B_U10_C11NANNANT00.31OP20
111dk1_B_C11_G12NANNANT00.34ZZ1S
121dk1_B_G12_G13NANNANT00.55AAS1
131dk1_B_G13_G14AA1AA01720.37AA01
141dk1_B_G14_C15AAAAA08490.48AA08
151dk1_B_C15_U16AA1AA06590.42AA06
161dk1_B_U16_A17NANNANT01.53AA01
171dk1_B_A17_G18NANNANT00.47OP12
181dk1_B_G18_A19AAAAA04570.41AA04
191dk1_B_A19_C20AAAAA00720.16AA00
201dk1_B_C20_G21AAAAA00680.15AA00
211dk1_B_G21_G22AAAAA00520.29AA00
221dk1_B_G22_U23AAAAA00830.17AA00
231dk1_B_U23_G24AAAAA00700.23AA00
241dk1_B_G24_G25AA1AA01890.21AA01
251dk1_B_G25_G26AAAAA08590.37AA08
261dk1_B_G26_A.A27AAAAA00410.28AA00
271dk1_B_A.A27_G.A28NANNANT00.88AB02
281dk1_B_A.B27_G.B28NANNANT01.31OP09
291dk1_B_G.A28_A.A29NANNANT00.97OP13
301dk1_B_G.B28_A.B29NANNANT00.79OP15
311dk1_B_A.B29_G30NANNANT00.31OP13
321dk1_B_G30_G31AAAAA08870.22AA08
331dk1_B_G31_C32AAAAA00850.17AA00
341dk1_B_C32_U33AAAAA00740.19AA00
351dk1_B_U33_U34NANNANT01.76BB1S
361dk1_B_U34_C35NANNANT00.68OPS1
371dk1_B_C35_G36NANNANT01.68AB02
381dk1_B_G36_G37AA1AA10170.27AA10
391dk1_B_G37_C38NANNANT00.58AB02
401dk1_B_C38_U39AA1AA01420.36AA01
411dk1_B_U39_G40AA2AA12770.34AA12
421dk1_B_G40_G41AAAAA00410.24AA00
431dk1_B_G41_U42AAAAA00670.22AA00
441dk1_B_U42_C43AAAAA08830.30AA08
451dk1_B_C43_C44NANNANT00.69IC03
461dk1_B_C44_A45AAAAA00260.27AA00
471dk1_B_A45_C46A-BAB05660.28AB05
481dk1_B_C46_C47NANNANT01.67BB11
491dk1_B_C47_C48NANNANT00.68OP10
501dk1_B_C48_G49AAAAA00530.27AA00
511dk1_B_G49_U50AAAAA00860.15AA00
521dk1_B_U50_G51A-BAB05420.65AB05
531dk1_B_G51_A52NANNANT00.45OP10
541dk1_B_A52_C53NANNANT02.04AA01
551dk1_B_C53_G54NANNANT01.11OPS1
561dk1_B_G54_C55AAAAA00780.25AA00
571dk1_B_C55_U56AAAAA00510.27AA00
581dk1_B_U56_C57NANNANT00.58AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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