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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
DNA/RNA HYBRID DUPLEX CONTAINING A PURINE-RICH DNA STRAND, NMR, 10 STRUCTURES

Results of the assignment of 180 detected steps in 10 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0011drr-m10_A_DG1_DA2BBBBB01550.21BB01
0021drr-m1_A_DG1_DA2BBBBB01560.20BB01
0031drr-m2_A_DG1_DA2BBBBB01680.17BB01
0041drr-m3_A_DG1_DA2BBBBB01640.21BB01
0051drr-m4_A_DG1_DA2BBBBB01590.20BB01
0061drr-m5_A_DG1_DA2BBBBB01590.20BB01
0071drr-m6_A_DG1_DA2A-BAB01240.39AB01
0081drr-m7_A_DG1_DA2BBBBB01600.20BB01
0091drr-m8_A_DG1_DA2A-BAB01250.41AB01
0101drr-m9_A_DG1_DA2BBBBB01560.21BB01
0111drr-m10_A_DA2_DA3BBBBB01680.19BB01
0121drr-m1_A_DA2_DA3BBBBB01600.22BB01
0131drr-m2_A_DA2_DA3BBBBB01690.18BB01
0141drr-m3_A_DA2_DA3B-ABA01200.27BA01
0151drr-m4_A_DA2_DA3BBBBB01670.19BB01
0161drr-m5_A_DA2_DA3BBBBB01560.19BB01
0171drr-m6_A_DA2_DA3BBBBB01590.20BB01
0181drr-m7_A_DA2_DA3BBBBB01580.22BB01
0191drr-m8_A_DA2_DA3BBBBB01500.22BB01
0201drr-m9_A_DA2_DA3BBBBB01620.20BB01
0211drr-m10_A_DA3_DG4BBBBB01680.21BB01
0221drr-m1_A_DA3_DG4NANNANT00.36BA05
0231drr-m2_A_DA3_DG4BBBBB01660.20BB01
0241drr-m3_A_DA3_DG4NANNANT00.55AB04
0251drr-m4_A_DA3_DG4BBBBB01580.23BB01
0261drr-m5_A_DA3_DG4NANNANT00.81AB02
0271drr-m6_A_DA3_DG4BBBBB01570.23BB01
0281drr-m7_A_DA3_DG4BBBBB01540.23BB01
0291drr-m8_A_DA3_DG4BBBBB01580.21BB01
0301drr-m9_A_DA3_DG4BBBBB01560.23BB01
0311drr-m10_A_DG4_DA5B-ABA10160.53BA10
0321drr-m1_A_DG4_DA5A-BAB01250.39AB01
0331drr-m2_A_DG4_DA5BBBBB01640.20BB01
0341drr-m3_A_DG4_DA5BBBBB01350.24BB01
0351drr-m4_A_DG4_DA5BBBBB01470.25BB01
0361drr-m5_A_DG4_DA5BBBBB01390.23BB01
0371drr-m6_A_DG4_DA5BBBBB01510.23BB01
0381drr-m7_A_DG4_DA5B-ABA01180.29BA01
0391drr-m8_A_DG4_DA5BBBBB01590.21BB01
0401drr-m9_A_DG4_DA5BBBBB01660.20BB01
0411drr-m10_A_DA5_DG6A-BAB01270.38AB01
0421drr-m1_A_DA5_DG6BBBBB01570.23BB01
0431drr-m2_A_DA5_DG6BBBBB01690.19BB01
0441drr-m3_A_DA5_DG6B-ABA01140.29BA01
0451drr-m4_A_DA5_DG6BBBBB01590.21BB01
0461drr-m5_A_DA5_DG6BBBBB01530.23BB01
0471drr-m6_A_DA5_DG6BBBBB01620.20BB01
0481drr-m7_A_DA5_DG6A-BAB01210.39AB01
0491drr-m8_A_DA5_DG6BBBBB01550.22BB01
0501drr-m9_A_DA5_DG6BBBBB01600.21BB01
0511drr-m10_A_DG6_DA7BBBBB00600.22BB00
0521drr-m1_A_DG6_DA7B-ABA01100.36BA01
0531drr-m2_A_DG6_DA7BBBBB00580.21BB00
0541drr-m3_A_DG6_DA7A-BAB01380.36AB01
0551drr-m4_A_DG6_DA7BBBBB00570.23BB00
0561drr-m5_A_DG6_DA7B-ABA01200.30BA01
0571drr-m6_A_DG6_DA7BBBBB00530.24BB00
0581drr-m7_A_DG6_DA7BBBBB00590.23BB00
0591drr-m8_A_DG6_DA7BBBBB00580.23BB00
0601drr-m9_A_DG6_DA7BBBBB00500.23BB00
0611drr-m10_A_DA7_DA8BBBBB01730.17BB01
0621drr-m1_A_DA7_DA8AAAAA00530.27AA00
0631drr-m2_A_DA7_DA8BBBBB01710.18BB01
0641drr-m3_A_DA7_DA8BBBBB01500.21BB01
0651drr-m4_A_DA7_DA8BBBBB01590.21BB01
0661drr-m5_A_DA7_DA8NANNANT00.52AB04
0671drr-m6_A_DA7_DA8BB1BB03480.34BB03
0681drr-m7_A_DA7_DA8BBBBB01680.18BB01
0691drr-m8_A_DA7_DA8B-ABA01320.27BA01
0701drr-m9_A_DA7_DA8BBBBB01720.18BB01
0711drr-m10_A_DA8_DG9BB1BB03340.39BB03
0721drr-m1_A_DA8_DG9AAAAA00560.25AA00
0731drr-m2_A_DA8_DG9BBBBB01720.18BB01
0741drr-m3_A_DA8_DG9BBBBB01590.21BB01
0751drr-m4_A_DA8_DG9BBBBB01690.19BB01
0761drr-m5_A_DA8_DG9NANNANT00.94AB02
0771drr-m6_A_DA8_DG9BBBBB01640.19BB01
0781drr-m7_A_DA8_DG9B-ABA10100.63BA10
0791drr-m8_A_DA8_DG9NANNANT00.57AB04
0801drr-m9_A_DA8_DG9BBBBB01570.21BB01
0811drr-m10_A_DG9_DC10B-ABA10160.63BA10
0821drr-m1_A_DG9_DC10NANNANT00.53AB04
0831drr-m2_A_DG9_DC10BBBBB01660.21BB01
0841drr-m3_A_DG9_DC10BBBBB01620.21BB01
0851drr-m4_A_DG9_DC10BBBBB01640.21BB01
0861drr-m5_A_DG9_DC10NANNANT00.38AB05
0871drr-m6_A_DG9_DC10BBBBB01580.22BB01
0881drr-m7_A_DG9_DC10AAAAA00490.28AA00
0891drr-m8_A_DG9_DC10BBBBB01380.24BB01
0901drr-m9_A_DG9_DC10BBBBB01610.22BB01
0911drr-m10_B_G1_C2AA1AA01910.24AA01
0921drr-m1_B_G1_C2AA1AA01900.25AA01
0931drr-m2_B_G1_C2AAAAA00740.11AA00
0941drr-m3_B_G1_C2AA1AA01250.62AA01
0951drr-m4_B_G1_C2AAAAA00760.11AA00
0961drr-m5_B_G1_C2AAAAA00750.10AA00
0971drr-m6_B_G1_C2AA1AA01920.19AA01
0981drr-m7_B_G1_C2AA1AA01930.21AA01
0991drr-m8_B_G1_C2AAAAA00750.17AA00
1001drr-m9_B_G1_C2AAAAA00800.11AA00
1011drr-m10_B_C2_U3AAAAA00780.16AA00
1021drr-m1_B_C2_U3AAAAA00660.26AA00
1031drr-m2_B_C2_U3AAAAA00790.11AA00
1041drr-m3_B_C2_U3AA1AA01930.22AA01
1051drr-m4_B_C2_U3AAAAA00710.11AA00
1061drr-m5_B_C2_U3AAAAA00570.26AA00
1071drr-m6_B_C2_U3AAAAA00800.15AA00
1081drr-m7_B_C2_U3AAAAA00770.19AA00
1091drr-m8_B_C2_U3AA1AA01920.23AA01
1101drr-m9_B_C2_U3NANNANT00.39AA10
1111drr-m10_B_U3_U4AAAAA00760.12AA00
1121drr-m1_B_U3_U4AA1AA01900.21AA01
1131drr-m2_B_U3_U4AA1AA01900.19AA01
1141drr-m3_B_U3_U4AAAAA00760.15AA00
1151drr-m4_B_U3_U4AA1AA01920.19AA01
1161drr-m5_B_U3_U4AA1AA01940.17AA01
1171drr-m6_B_U3_U4AAAAA00750.12AA00
1181drr-m7_B_U3_U4AAAAA00810.10AA00
1191drr-m8_B_U3_U4AA1AA01790.22AA01
1201drr-m9_B_U3_U4AAAAA00700.21AA00
1211drr-m10_B_U4_C5AAAAA00770.13AA00
1221drr-m1_B_U4_C5AAAAA00760.19AA00
1231drr-m2_B_U4_C5AAAAA00770.15AA00
1241drr-m3_B_U4_C5AAAAA00770.12AA00
1251drr-m4_B_U4_C5AAAAA00820.13AA00
1261drr-m5_B_U4_C5AAAAA00760.16AA00
1271drr-m6_B_U4_C5AA1AA01920.17AA01
1281drr-m7_B_U4_C5AAAAA00690.14AA00
1291drr-m8_B_U4_C5AAAAA00760.18AA00
1301drr-m9_B_U4_C5AA1AA01930.17AA01
1311drr-m10_B_C5_U6AA1AA01950.19AA01
1321drr-m1_B_C5_U6AA1AA01900.27AA01
1331drr-m2_B_C5_U6AA1AA01910.18AA01
1341drr-m3_B_C5_U6AAAAA00780.15AA00
1351drr-m4_B_C5_U6AAAAA00710.11AA00
1361drr-m5_B_C5_U6AAAAA00780.12AA00
1371drr-m6_B_C5_U6AAAAA00750.16AA00
1381drr-m7_B_C5_U6AA1AA01930.18AA01
1391drr-m8_B_C5_U6AAAAA00760.12AA00
1401drr-m9_B_C5_U6AA1AA01800.22AA01
1411drr-m10_B_U6_C7AAAAA00820.12AA00
1421drr-m1_B_U6_C7AAAAA00810.14AA00
1431drr-m2_B_U6_C7AA1AA01810.20AA01
1441drr-m3_B_U6_C7AAAAA00700.13AA00
1451drr-m4_B_U6_C7AA1AA01910.19AA01
1461drr-m5_B_U6_C7AA1AA01930.18AA01
1471drr-m6_B_U6_C7AA1AA01900.20AA01
1481drr-m7_B_U6_C7AAAAA00770.19AA00
1491drr-m8_B_U6_C7AAAAA00750.12AA00
1501drr-m9_B_U6_C7AAAAA00760.19AA00
1511drr-m10_B_C7_U8AAAAA00830.10AA00
1521drr-m1_B_C7_U8AAAAA00720.14AA00
1531drr-m2_B_C7_U8AA1AA01770.25AA01
1541drr-m3_B_C7_U8AA1AA01950.18AA01
1551drr-m4_B_C7_U8AAAAA00820.16AA00
1561drr-m5_B_C7_U8AAAAA00850.13AA00
1571drr-m6_B_C7_U8AAAAA00820.16AA00
1581drr-m7_B_C7_U8AA1AA01890.23AA01
1591drr-m8_B_C7_U8AAAAA00770.13AA00
1601drr-m9_B_C7_U8AA1AA01920.20AA01
1611drr-m10_B_U8_U9AAAAA00660.13AA00
1621drr-m1_B_U8_U9AAAAA00780.15AA00
1631drr-m2_B_U8_U9AAAAA00790.18AA00
1641drr-m3_B_U8_U9AAAAA00800.18AA00
1651drr-m4_B_U8_U9AAAAA00820.11AA00
1661drr-m5_B_U8_U9AAAAA00740.11AA00
1671drr-m6_B_U8_U9AAAAA00650.16AA00
1681drr-m7_B_U8_U9AAAAA00780.14AA00
1691drr-m8_B_U8_U9AA1AA01920.27AA01
1701drr-m9_B_U8_U9AAAAA00780.16AA00
1711drr-m10_B_U9_C10AAAAA00790.12AA00
1721drr-m1_B_U9_C10AAAAA00780.12AA00
1731drr-m2_B_U9_C10AAAAA00780.13AA00
1741drr-m3_B_U9_C10AAAAA00700.14AA00
1751drr-m4_B_U9_C10AAAAA00780.13AA00
1761drr-m5_B_U9_C10AAAAA00670.14AA00
1771drr-m6_B_U9_C10AAAAA00760.14AA00
1781drr-m7_B_U9_C10AAAAA00810.12AA00
1791drr-m8_B_U9_C10AAAAA00800.15AA00
1801drr-m9_B_U9_C10AA1AA01930.20AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N