Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
NMR STUDY OF DNA (5'-D(*GP*AP*AP*GP*CP*TP*TP*C)-3') SELF-COMPLEMENTARY DUPLEX COMPLEXED WITH ACTINOMYCIN D, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011dsc_A_DG1_DA2B-ABA05330.40BA05
021dsc_A_DA2_DA3NANNANT00.60BB17
031dsc_A_DA3_DG4NANNANT01.01AB02
041dsc_A_DG4_DC5NANNANT00.65BB08
051dsc_A_DC5_DT6NANNANT00.47BA17
061dsc_A_DT6_DT7NANNANT00.52BB01
071dsc_A_DT7_DC8B-ABA0190.32BA01
081dsc_B_DG9_DA10B-ABA05310.41BA05
091dsc_B_DA10_DA11BB1BB16160.62BB16
101dsc_B_DA11_DG12NANNANT01.09BB08
111dsc_B_DG12_DC13NANNANT00.59AA02
121dsc_B_DC13_DT14NANNANT00.37BA05
131dsc_B_DT14_DT15BBBBB01110.43BB01
141dsc_B_DT15_DC16B-ABA0190.31BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N