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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
CRYSTAL STRUCTURE OF MEF2A CORE BOUND TO DNA

Results of the assignment of 128 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0011egw_E_DA.A1_DA.A2SYNBBS1720.30BBS1
0021egw_E_DA.B1_DA.B2SYNBBS1220.48BBS1
0031egw_E_DA.A2_DA.A3BBBBB00720.29BB00
0041egw_E_DA.B2_DA.B3BB2BB07710.29BB07
0051egw_E_DA.A3_DG.A4BBBBB00720.23BB00
0061egw_E_DA.B3_DG.B4BBBBB00630.38BB00
0071egw_E_DG.A4_DC.A5BBBBB00840.23BB00
0081egw_E_DG.B4_DC.B5BB2BB07660.30BB07
0091egw_E_DC.A5_DT.A6BBBBB00840.23BB00
0101egw_E_DC.B5_DT.B6BBBBB00540.42BB00
0111egw_E_DT.A6_DA.A7BB2BB07850.19BB07
0121egw_E_DT.B6_DA.B7BB2BB07820.20BB07
0131egw_E_DA.A7_DT.A8BBBBB01670.25BB01
0141egw_E_DA.B7_DT.B8BBBBB00760.27BB00
0151egw_E_DT.A8_DT.A9BBBBB00260.40BB00
0161egw_E_DT.B8_DT.B9BBBBB00760.27BB00
0171egw_E_DT.A9_DA.A10BBBBB00770.20BB00
0181egw_E_DT.B9_DA.B10BBBBB00870.16BB00
0191egw_E_DA.A10_DT.A11BBBBB00860.19BB00
0201egw_E_DA.B10_DT.B11BBBBB00860.22BB00
0211egw_E_DT.A11_DT.A12BBBBB00870.31BB00
0221egw_E_DT.B11_DT.B12BBBBB00810.29BB00
0231egw_E_DT.A12_DA.A13BB2BB07560.39BB07
0241egw_E_DT.B12_DA.B13BB2BB07550.39BB07
0251egw_E_DA.A13_DG.A14BBBBB00470.43BB00
0261egw_E_DA.B13_DG.B14BBBBB00610.28BB00
0271egw_E_DG.A14_DC.A15BBBBB00830.22BB00
0281egw_E_DG.B14_DC.B15BBBBB00500.52BB00
0291egw_E_DC.A15_DT.A16BBBBB00910.26BB00
0301egw_E_DC.B15_DT.B16BBBBB00530.39BB00
0311egw_E_DT.A16_DT.A17BB1BB02250.43BB02
0321egw_E_DT.B16_DT.B17BBBBB00670.23BB00
0331egw_F_DT.A1_DA.A2BB1BB16290.59BB16
0341egw_F_DT.B1_DA.B2BBBBB00540.55BB00
0351egw_F_DA.A2_DA.A3BBBBB00660.30BB00
0361egw_F_DA.B2_DA.B3BB2BB07750.29BB07
0371egw_F_DA.A3_DG.A4BBBBB00790.20BB00
0381egw_F_DA.B3_DG.B4BBBBB00700.36BB00
0391egw_F_DG.A4_DC.A5BBBBB00870.28BB00
0401egw_F_DG.B4_DC.B5BB2BB07610.28BB07
0411egw_F_DC.A5_DT.A6BBBBB00830.22BB00
0421egw_F_DC.B5_DT.B6BBBBB00460.45BB00
0431egw_F_DT.A6_DA.A7BB2BB07810.20BB07
0441egw_F_DT.B6_DA.B7BB2BB07900.16BB07
0451egw_F_DA.A7_DA.A8B-ABA05850.20BA05
0461egw_F_DA.B7_DA.B8B-ABA05840.18BA05
0471egw_F_DA.A8_DT.A9BBBBB01130.44BB01
0481egw_F_DA.B8_DT.B9BBBBB00160.37BB00
0491egw_F_DT.A9_DA.A10BBBBB00810.18BB00
0501egw_F_DT.B9_DA.B10BBBBB00840.15BB00
0511egw_F_DA.A10_DA.A11BBBBB00810.19BB00
0521egw_F_DA.B10_DA.B11BBBBB00770.22BB00
0531egw_F_DA.A11_DT.A12BBBBB00860.33BB00
0541egw_F_DA.B11_DT.B12BBBBB00890.25BB00
0551egw_F_DT.A12_DA.A13BB2BB07350.39BB07
0561egw_F_DT.B12_DA.B13BB2BB07650.27BB07
0571egw_F_DA.A13_DG.A14BBBBB00380.47BB00
0581egw_F_DA.B13_DG.B14BBBBB00650.35BB00
0591egw_F_DG.A14_DC.A15BBBBB00790.22BB00
0601egw_F_DG.B14_DC.B15B12BB04570.38BB04
0611egw_F_DC.A15_DT.A16BBBBB00910.28BB00
0621egw_F_DC.B15_DT.B16BBBBB00330.45BB00
0631egw_F_DT.A16_DT.A17NANNANT00.51BB08
0641egw_F_DT.B16_DT.B17BBBBB00760.21BB00
0651egw_G_DT.A1_DA.A2BB1BB16440.52BB16
0661egw_G_DT.B1_DA.B2BB1BB16280.50BB16
0671egw_G_DA.A2_DA.A3BBBBB00580.38BB00
0681egw_G_DA.B2_DA.B3BB2BB07660.31BB07
0691egw_G_DA.A3_DG.A4BBBBB00880.16BB00
0701egw_G_DA.B3_DG.B4BBBBB00580.39BB00
0711egw_G_DG.A4_DC.A5BBBBB00830.34BB00
0721egw_G_DG.B4_DC.B5BB2BB07640.31BB07
0731egw_G_DC.A5_DT.A6BBBBB00760.30BB00
0741egw_G_DC.B5_DT.B6BBBBB00470.43BB00
0751egw_G_DT.A6_DA.A7BB2BB07890.18BB07
0761egw_G_DT.B6_DA.B7BB2BB07900.16BB07
0771egw_G_DA.A7_DA.A8B-ABA05810.21BA05
0781egw_G_DA.B7_DA.B8BBBBB01650.26BB01
0791egw_G_DA.A8_DT.A9NANNANT00.47AB03
0801egw_G_DA.B8_DT.B9BBBBB00120.45BB00
0811egw_G_DT.A9_DA.A10BBBBB00830.18BB00
0821egw_G_DT.B9_DA.B10BBBBB00750.17BB00
0831egw_G_DA.A10_DA.A11BBBBB00750.19BB00
0841egw_G_DA.B10_DA.B11BBBBB00780.26BB00
0851egw_G_DA.A11_DT.A12BBBBB00870.28BB00
0861egw_G_DA.B11_DT.B12BBBBB00860.29BB00
0871egw_G_DT.A12_DA.A13BB2BB07420.35BB07
0881egw_G_DT.B12_DA.B13BB2BB07530.31BB07
0891egw_G_DA.A13_DG.A14BBBBB00590.37BB00
0901egw_G_DA.B13_DG.B14BBBBB00620.33BB00
0911egw_G_DG.A14_DC.A15B12BB04840.31BB04
0921egw_G_DG.B14_DC.B15B12BB04530.41BB04
0931egw_G_DC.A15_DT.A16BBBBB00950.21BB00
0941egw_G_DC.B15_DT.B16BBBBB00430.35BB00
0951egw_G_DT.A16_DT.A17BB1BB02280.44BB02
0961egw_G_DT.B16_DT.B17NANNANT00.26BB03
0971egw_H_DA.A1_DA.A2SYNBBS1800.25BBS1
0981egw_H_DA.B1_DA.B2SYNBBS1610.36BBS1
0991egw_H_DA.A2_DA.A3BBBBB00740.30BB00
1001egw_H_DA.B2_DA.B3BB2BB07650.33BB07
1011egw_H_DA.A3_DG.A4BBBBB00840.18BB00
1021egw_H_DA.B3_DG.B4BBBBB00670.36BB00
1031egw_H_DG.A4_DC.A5BBBBB00860.27BB00
1041egw_H_DG.B4_DC.B5BB2BB07750.29BB07
1051egw_H_DC.A5_DT.A6BBBBB00880.21BB00
1061egw_H_DC.B5_DT.B6BBBBB00700.32BB00
1071egw_H_DT.A6_DA.A7BB2BB07850.20BB07
1081egw_H_DT.B6_DA.B7BB2BB07850.20BB07
1091egw_H_DA.A7_DT.A8BBBBB01740.25BB01
1101egw_H_DA.B7_DT.B8BBBBB01710.27BB01
1111egw_H_DT.A8_DT.A9BBBBB00670.27BB00
1121egw_H_DT.B8_DT.B9BBBBB00690.28BB00
1131egw_H_DT.A9_DA.A10BBBBB00920.16BB00
1141egw_H_DT.B9_DA.B10BBBBB00920.15BB00
1151egw_H_DA.A10_DT.A11BBBBB00850.16BB00
1161egw_H_DA.B10_DT.B11BBBBB00850.23BB00
1171egw_H_DT.A11_DT.A12BBBBB00890.27BB00
1181egw_H_DT.B11_DT.B12BBBBB00850.30BB00
1191egw_H_DT.A12_DA.A13BB2BB07480.45BB07
1201egw_H_DT.B12_DA.B13BB2BB07490.42BB07
1211egw_H_DA.A13_DG.A14BBBBB00500.42BB00
1221egw_H_DA.B13_DG.B14BBBBB00580.36BB00
1231egw_H_DG.A14_DC.A15BBBBB00860.22BB00
1241egw_H_DG.B14_DC.B15BBBBB00670.36BB00
1251egw_H_DC.A15_DT.A16BBBBB00920.26BB00
1261egw_H_DC.B15_DT.B16BBBBB00600.34BB00
1271egw_H_DT.A16_DT.A17BB1BB02330.44BB02
1281egw_H_DT.B16_DT.B17BBBBB00640.23BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N