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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
STRUCTURE OF RIBOSOMAL PROTEINS S15, S6, S18, AND 16S RIBOSOMAL RNA

Results of the assignment of 165 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0011g1x_D_A582_A583NANNANT00.92AA04
0021g1x_D_A583_G584NANNANT00.49AA04
0031g1x_D_G584_G585AA1AA01400.38AA01
0041g1x_D_G585_C586AAAAA00570.30AA00
0051g1x_D_C586_G587AAAAA00450.30AA00
0061g1x_D_G587_G588OPNOP07250.47OP07
0071g1x_D_G588_C589AAAAA00610.27AA00
0081g1x_D_C589_C590AAAAA00750.21AA00
0091g1x_D_C590_G591AAAAA00650.26AA00
0101g1x_D_G591_A592OPNOP03530.28OP03
0111g1x_D_A592_A593AAAAA08720.28AA08
0121g1x_D_A593_A594AAAAA00690.27AA00
0131g1x_D_A594_G649AAAAA04120.70AA04
0141g1x_D_G649_G650AAAAA00810.14AA00
0151g1x_D_G650_C651AAAAA00730.21AA00
0161g1x_D_C651_U652AAAAA04780.53AA04
0171g1x_D_U652_A653NANNANT01.51ZZ01
0181g1x_D_A653_G654NANNANT01.34AB02
0191g1x_D_G654_A655AAAAA00230.35AA00
0201g1x_D_A655_C656AAAAA08880.16AA08
0211g1x_D_C656_G657AAAAA00720.15AA00
0221g1x_D_G657_G658AAAAA00640.28AA00
0231g1x_D_G658_U659AAAAA00570.21AA00
0241g1x_D_U659_G660AAAAA00440.20AA00
0251g1x_D_G660_G661AA1AA01790.29AA01
0261g1x_D_G661_G662AAAAA00330.35AA00
0271g1x_D_G662_A663AAAAA00820.32AA00
0281g1x_D_A663_G664AAAAA08700.31AA08
0291g1x_D_G664_A665NANNANT01.04OP04
0301g1x_D_A665_G666NANNANT01.04OP13
0311g1x_D_G666_G667AAAAA00640.27AA00
0321g1x_D_G667_G668AAAAA00810.16AA00
0331g1x_D_G668_U669AAAAA00790.17AA00
0341g1x_D_U669_G670AAAAA00800.15AA00
0351g1x_D_G670_G671AA1AA01790.17AA01
0361g1x_D_G671_U672AAAAA08200.26AA08
0371g1x_D_U672_G673AAAAA04580.42AA04
0381g1x_D_G673_G674AAAAA00800.25AA00
0391g1x_D_G674_A675AAAAA00600.21AA00
0401g1x_E_A716_C717NANNANT01.88OP01
0411g1x_E_C717_G718NANNANT01.64OP19
0421g1x_E_G718_C719AAAAA08740.36AA08
0431g1x_E_C719_C720AAAAA08230.56AA08
0441g1x_E_C720_G721NANNANT00.42ZZ01
0451g1x_E_G721_A722NANNANT00.51ZZ1S
0461g1x_E_A722_U723NANNANT01.00OP14
0471g1x_E_U723_G724NANNANT00.57OP11
0481g1x_E_G724_G725AAAAA00200.34AA00
0491g1x_E_G725_C726AAAAA00880.14AA00
0501g1x_E_C726_G727AAAAA00890.16AA00
0511g1x_E_G727_A728OPNOP03800.25OP03
0521g1x_E_A728_A729AAAAA00800.26AA00
0531g1x_E_A729_G730AAAAA00650.30AA00
0541g1x_E_G730_G731NANNANT01.11AA08
0551g1x_E_G731_C732AAAAA00660.16AA00
0561g1x_E_C732_A733NANNANT00.59IC02
0571g1x_E_A733_G734NANNANT01.69OP16
0581g1x_E_G734_C735AAAAA00640.21AA00
0591g1x_E_C735_C736AAAAA00740.20AA00
0601g1x_E_C736_A737AAAAA00870.23AA00
0611g1x_E_A737_C738AAAAA00830.17AA00
0621g1x_E_C738_C739AAAAA00940.14AA00
0631g1x_E_C739_U740AAAAA00910.18AA00
0641g1x_E_U740_G741AA2AA12780.35AA12
0651g1x_E_G741_G742AAAAA00830.14AA00
0661g1x_E_G742_U743AAAAA00720.26AA00
0671g1x_E_U743_C744AAAAA00870.23AA00
0681g1x_E_C744_C745AAAAA00730.26AA00
0691g1x_E_C745_A746AAAAA00730.19AA00
0701g1x_E_A746_C747AAAAA00760.18AA00
0711g1x_E_C747_C748NANNANT00.83AA03
0721g1x_E_C748_C749NANNANT00.87AA12
0731g1x_E_C749_G750AAAAA00610.31AA00
0741g1x_E_G750_U751AAAAA00680.19AA00
0751g1x_E_U751_G752NANNANT00.69AB03
0761g1x_E_G752_A753NANNANT00.53AA13
0771g1x_E_A753_C754NANNANT00.31ZZ1S
0781g1x_E_C754_G755NANNANT01.42OP01
0791g1x_E_G755_C756AAAAA00740.20AA00
0801g1x_E_C756_U757AAAAA00630.36AA00
0811g1x_E_U757_U758AAAAA00170.44AA00
0821g1x_E_U758_U759AAAAA02500.38AA02
0831g1x_I_A582_A583NANNANT00.68AA12
0841g1x_I_A583_G584AAAAA00650.26AA00
0851g1x_I_G584_G585AAAAA00560.24AA00
0861g1x_I_G585_C586AAAAA00650.17AA00
0871g1x_I_C586_G587AAAAA00700.20AA00
0881g1x_I_G587_G588NANNANT01.12IC03
0891g1x_I_G588_C589AA2AA12520.52AA12
0901g1x_I_C589_C590AA1AA10400.33AA10
0911g1x_I_C590_G591AA1AA11780.29AA11
0921g1x_I_G591_A592NANNANT01.14OP05
0931g1x_I_A592_A593AA1AA06420.53AA06
0941g1x_I_A593_A594NANNANT00.41AA06
0951g1x_I_A594_G649NANNANT01.23AA04
0961g1x_I_G649_G650AA1AA01300.39AA01
0971g1x_I_G650_C651NANNANT00.72AA03
0981g1x_I_C651_U652AA1AA01180.42AA01
0991g1x_I_U652_A653NANNANT01.72AB02
1001g1x_I_A653_G654NANNANT01.93OP15
1011g1x_I_G654_A655AAAAA00220.33AA00
1021g1x_I_A655_C656AAAAA00890.14AA00
1031g1x_I_C656_G657AAAAA00790.19AA00
1041g1x_I_G657_G658AAAAA00630.28AA00
1051g1x_I_G658_U659AAAAA00790.20AA00
1061g1x_I_U659_G660AAAAA00570.22AA00
1071g1x_I_G660_G661AA1AA01770.29AA01
1081g1x_I_G661_G662AAAAA08280.47AA08
1091g1x_I_G662_A663AAAAA00900.24AA00
1101g1x_I_A663_G664AAAAA00880.11AA00
1111g1x_I_G664_A665NANNANT01.01OP04
1121g1x_I_A665_G666NANNANT01.07OP13
1131g1x_I_G666_G667AAAAA08580.34AA08
1141g1x_I_G667_G668AAAAA00710.16AA00
1151g1x_I_G668_U669AAAAA00790.22AA00
1161g1x_I_U669_G670AAAAA00910.14AA00
1171g1x_I_G670_G671AA1AA01660.21AA01
1181g1x_I_G671_U672AAAAA08330.42AA08
1191g1x_I_U672_G673AAAAA04560.65AA04
1201g1x_I_G673_G674AAAAA00400.32AA00
1211g1x_I_G674_A675AAAAA00860.23AA00
1221g1x_I_A675_A676AAAAA04640.61AA04
1231g1x_J_A716_C717NANNANT01.39AA10
1241g1x_J_C717_G718NANNANT00.58AA13
1251g1x_J_G718_C719AAAAA08600.41AA08
1261g1x_J_C719_C720AAAAA08330.52AA08
1271g1x_J_C720_G721NANNANT00.36ZZ01
1281g1x_J_G721_A722NANNANT00.52ZZ1S
1291g1x_J_A722_U723NANNANT01.71OP06
1301g1x_J_U723_G724NANNANT01.77OP01
1311g1x_J_G724_G725AAAAA00820.20AA00
1321g1x_J_G725_C726AAAAA00770.17AA00
1331g1x_J_C726_G727AAAAA00890.13AA00
1341g1x_J_G727_A728OPNOP03750.24OP03
1351g1x_J_A728_A729AAAAA00760.28AA00
1361g1x_J_A729_G730AAAAA00660.24AA00
1371g1x_J_G730_G731NANNANT01.09AA08
1381g1x_J_G731_C732AAAAA00530.23AA00
1391g1x_J_C732_A733NANNANT00.88AA13
1401g1x_J_A733_G734NANNANT01.75OP16
1411g1x_J_G734_C735AAAAA00840.19AA00
1421g1x_J_C735_C736AAAAA00950.12AA00
1431g1x_J_C736_A737AAAAA00950.20AA00
1441g1x_J_A737_C738AAAAA00850.16AA00
1451g1x_J_C738_C739AAAAA00930.12AA00
1461g1x_J_C739_U740AAAAA00870.17AA00
1471g1x_J_U740_G741AA2AA12720.37AA12
1481g1x_J_G741_G742AAAAA00840.13AA00
1491g1x_J_G742_U743AAAAA00790.26AA00
1501g1x_J_U743_C744AAAAA00910.21AA00
1511g1x_J_C744_C745AAAAA00890.11AA00
1521g1x_J_C745_A746AAAAA08870.23AA08
1531g1x_J_A746_C747AAAAA00500.41AA00
1541g1x_J_C747_C748AAAAA08300.64AA08
1551g1x_J_C748_C749NANNANT01.23AA04
1561g1x_J_C749_G750AAAAA00480.34AA00
1571g1x_J_G750_U751AAAAA00800.16AA00
1581g1x_J_U751_G752AA1AA05440.36AA05
1591g1x_J_G752_A753NANNANT00.73IC04
1601g1x_J_A753_C754NANNANT00.54ZZ1S
1611g1x_J_C754_G755NANNANT01.46OP01
1621g1x_J_G755_C756AAAAA00720.18AA00
1631g1x_J_C756_U757AAAAA00300.29AA00
1641g1x_J_U757_U758AAAAA00440.35AA00
1651g1x_J_U758_U759AAAAA00360.33AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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