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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
THE CRYSTAL STRUCTURE OF THE ESTROGEN RECEPTOR DNA-BINDING DOMAIN BOUND TO DNA: HOW RECEPTORS DISCRIMINATE BETWEEN THEIR RESPONSE ELEMENTS

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011hcq_C_DC1_DC2A-BAB04210.47AB04
021hcq_C_DC2_DA3BBBBB0170.46BB01
031hcq_C_DA3_DG4BBBBB00790.33BB00
041hcq_C_DG4_DG5BB1BB02120.32BB02
051hcq_C_DG5_DT6NANNANT00.32BB01
061hcq_C_DT6_DC7BBBBB00510.36BB00
071hcq_C_DC7_DA8BB2BB07500.21BB07
081hcq_C_DA8_DC9B-ABA05550.24BA05
091hcq_C_DC9_DA10BBBBB00160.35BB00
101hcq_C_DA10_DG11BBBBB00590.23BB00
111hcq_C_DG11_DT12B-ABA05630.19BA05
121hcq_C_DT12_DG13A-BAB01150.38AB01
131hcq_C_DG13_DA14BB2BB07840.27BB07
141hcq_C_DA14_DC15miBBB15530.29BB15
151hcq_C_DC15_DC16B-ABA08660.56BA08
161hcq_C_DC16_DT17BBBBB00170.27BB00
171hcq_C_DT17_DG18BBBBB00510.34BB00
181hcq_D_DC19_DC20A-BAB01210.36AB01
191hcq_D_DC20_DA21BBBBB00200.42BB00
201hcq_D_DA21_DG22BBBBB00310.44BB00
211hcq_D_DG22_DG23B12BB04600.33BB04
221hcq_D_DG23_DT24miBBB15770.26BB15
231hcq_D_DT24_DC25BBBBB00330.37BB00
241hcq_D_DC25_DA26BB2BB07460.21BB07
251hcq_D_DA26_DC27B-ABA05330.23BA05
261hcq_D_DC27_DT28AAAAA02260.55AA02
271hcq_D_DT28_DG29BBBBB00160.32BB00
281hcq_D_DG29_DT30B-ABA05170.22BA05
291hcq_D_DT30_DG31A-BAB03240.30AB03
301hcq_D_DG31_DA32BB2BB07810.21BB07
311hcq_D_DA32_DC33B-ABA05600.15BA05
321hcq_D_DC33_DC34NANNANT00.41BB02
331hcq_D_DC34_DT35NANNANT00.26BB15
341hcq_D_DT35_DG36NANNANT00.35BB01
351hcq_G_DC1_DC2NANNANT00.52AB04
361hcq_G_DC2_DA3BBBBB00350.44BB00
371hcq_G_DA3_DG4BBBBB00700.37BB00
381hcq_G_DG4_DG5NANNANT00.55BB08
391hcq_G_DG5_DT6BBBBB01550.33BB01
401hcq_G_DT6_DC7BBBBB00230.32BB00
411hcq_G_DC7_DA8BB2BB07790.17BB07
421hcq_G_DA8_DC9B-ABA05460.26BA05
431hcq_G_DC9_DA10A-BAB01120.33AB01
441hcq_G_DA10_DG11NANNANT00.30BB04
451hcq_G_DG11_DT12BBBBB01220.25BB01
461hcq_G_DT12_DG13BBBBB00380.36BB00
471hcq_G_DG13_DA14BB2BB07780.24BB07
481hcq_G_DA14_DC15B-ABA01180.24BA01
491hcq_G_DC15_DC16A-BAB01100.44AB01
501hcq_G_DC16_DT17BBBBB01170.32BB01
511hcq_G_DT17_DG18BBBBB00160.43BB00
521hcq_H_DC19_DC20A-BAB0180.38AB01
531hcq_H_DC20_DA21BBBBB00180.46BB00
541hcq_H_DA21_DG22BBBBB00390.44BB00
551hcq_H_DG22_DG23NANNANT00.38BB10
561hcq_H_DG23_DT24miBBB15850.24BB15
571hcq_H_DT24_DC25BBBBB00320.37BB00
581hcq_H_DC25_DA26BB2BB07690.16BB07
591hcq_H_DA26_DC27B-ABA01190.29BA01
601hcq_H_DC27_DT28BBBBB01140.28BB01
611hcq_H_DT28_DG29BBBBB00520.29BB00
621hcq_H_DG29_DT30BBBBB01680.14BB01
631hcq_H_DT30_DG31BBBBB00270.43BB00
641hcq_H_DG31_DA32BB2BB07680.18BB07
651hcq_H_DA32_DC33B-ABA01220.24BA01
661hcq_H_DC33_DC34A-BAB01190.36AB01
671hcq_H_DC34_DT35NANNANT00.37BB02
681hcq_H_DT35_DG36NANNANT00.39BB15

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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