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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNA

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011hlv_B_DG1_DC2BBBBB00800.24BB00
021hlv_B_DC2_DC3BBBBB00790.17BB00
031hlv_B_DC3_DT4BBBBB00710.31BB00
041hlv_B_DT4_DT5BBBBB00850.18BB00
051hlv_B_DT5_DC6BBBBB00870.15BB00
061hlv_B_DC6_DG7BBBBB00810.20BB00
071hlv_B_DG7_DT8B12BB04880.17BB04
081hlv_B_DT8_DT9BBBBB00850.24BB00
091hlv_B_DT9_DG10BB2BB07820.27BB07
101hlv_B_DG10_DG11BBBBB00790.28BB00
111hlv_B_DG11_DA12BB2BB07830.30BB07
121hlv_B_DA12_DA13BBBBB00810.28BB00
131hlv_B_DA13_DA14B-ABA08710.24BA08
141hlv_B_DA14_DC15BBBBB01160.34BB01
151hlv_B_DC15_DG16A-BAB03780.38AB03
161hlv_B_DG16_DG17BBBBB00550.44BB00
171hlv_B_DG17_DG18BB2BB07840.24BB07
181hlv_B_DG18_DA19BBBBB00920.18BB00
191hlv_B_DA19_DT20BBBBB00940.11BB00
201hlv_B_DT20_DT21BBBBB00670.30BB00
211hlv_C_DA1_DA2BBBBB00800.18BB00
221hlv_C_DA2_DT3BBwBB02860.15BB02
231hlv_C_DT3_DC4BBBBB00780.18BB00
241hlv_C_DC4_DC5BBBBB00920.12BB00
251hlv_C_DC5_DC6BBBBB00680.35BB00
261hlv_C_DC6_DG7BB2BB07810.18BB07
271hlv_C_DG7_DT8BBwBB02890.08BB02
281hlv_C_DT8_DT9BBBBB00860.23BB00
291hlv_C_DT9_DT10BBBBB00970.15BB00
301hlv_C_DT10_DC11BBBBB00810.20BB00
311hlv_C_DC11_DC12BB2BB07860.29BB07
321hlv_C_DC12_DA13BBBBB00730.21BB00
331hlv_C_DA13_DA14BB2BB07640.33BB07
341hlv_C_DA14_DC15BBBBB00710.29BB00
351hlv_C_DC15_DG16BB2BB07910.18BB07
361hlv_C_DG16_DA17B12BB04830.19BB04
371hlv_C_DA17_DA18BBwBB02910.15BB02
381hlv_C_DA18_DG19BBBBB00800.21BB00
391hlv_C_DG19_DG20B12BB04910.18BB04
401hlv_C_DG20_DC21miBBB13780.23BB13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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