Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
THE STRUCTURE OF ALPHA-THROMBIN INHIBITED BY A 15-MER SINGLE-STRANDED DNA APTAMER

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011hut_D_DG401_DG402NANNANT00.63AAS1
021hut_D_DG402_DT403NANNANT01.72OP05
031hut_D_DT403_DT404NANNANT01.47OP13
041hut_D_DT404_DG405NANNANT01.18AA13
051hut_D_DG405_DG406NANNANT00.59BBS1
061hut_D_DG406_DT407NANNANT01.81OP08
071hut_D_DT407_DG408NANNANT01.92IC04
081hut_D_DG408_DT409NANNANT01.38OP11
091hut_D_DT409_DG410NANNANT02.33IC04
101hut_D_DG410_DG411NANNANT00.91AAS1
111hut_D_DG411_DT412NANNANT02.05AB02
121hut_D_DT412_DT413NANNANT02.12OP19
131hut_D_DT413_DG414NANNANT01.86BB2S
141hut_D_DG414_DG415SYNAAS1280.51AAS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N