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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
1.45 A STRUCTURE OF THE A-DECAMER GCGTATACGC WITH A SINGLE 2'-O-FLUOROETHYL THYMINE IN PLACE OF T6, MEDIUM NA-SALT

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011i0g_A_DG1_DC2AAAAA00870.16AA00
021i0g_A_DC2_DG3AA1AA01930.04AA01
031i0g_A_DG3_DT4AAAAA00300.36AA00
041i0g_A_DT4_DA5AA1AA01840.26AA01
051i0g_A_DA7_DC8AAAAA00960.09AA00
061i0g_A_DC8_DG9AAAAA00940.14AA00
071i0g_A_DG9_DC10AAAAA00930.14AA00
081i0g_B_DG11_DC12AAAAA00760.17AA00
091i0g_B_DC12_DG13AAAAA00910.12AA00
101i0g_B_DG13_DT14AAAAA00860.18AA00
111i0g_B_DT14_DA15AAAAA00980.10AA00
121i0g_B_DA17_DC18AAAAA00880.13AA00
131i0g_B_DC18_DG19AAAAA00900.12AA00
141i0g_B_DG19_DC20AAAAA00690.20AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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