Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal Structure of a 14mer RNA Containing Double UU Bulges in Two Crystal Forms: A Novel U*(AU) Intramolecular Base Triple

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011ik5_A_G1_G2AAAAA00750.22AA00
021ik5_A_G2_U3AAAAA00770.18AA00
031ik5_A_U3_A4AAAAA00790.17AA00
041ik5_A_A4_U5AAAAA00790.15AA00
051ik5_A_U5_U6ICLIC02130.65IC02
061ik5_A_U6_U7NANNANT00.71OP21
071ik5_A_U7_C8NANNANT00.50OP21
081ik5_A_C8_G9AAAAA00620.16AA00
091ik5_A_G9_G10AAAAA00570.28AA00
101ik5_A_G10_U11AAAAA00830.16AA00
111ik5_A_U11_A12AAAAA00870.16AA00
121ik5_A_A12_CBR13AAAAA00920.18AA00
131ik5_A_CBR13_C14AAAAA00680.17AA00
141ik5_B_G15_G16AAAAA00630.24AA00
151ik5_B_G16_U17AAAAA08900.27AA08
161ik5_B_U17_A18AAAAA00850.13AA00
171ik5_B_A18_U19AAAAA00800.18AA00
181ik5_B_U19_U20ICLIC02290.59IC02
191ik5_B_U20_U21NANNANT00.66OP21
201ik5_B_U21_U22NANNANT00.71OP21
211ik5_B_U22_G23AAAAA00730.16AA00
221ik5_B_G23_G24AAAAA00750.24AA00
231ik5_B_G24_U25AAAAA00680.22AA00
241ik5_B_U25_A26AA1AA01800.17AA01
251ik5_B_A26_CBR27AAAAA00880.19AA00
261ik5_B_CBR27_C28AAAAA00810.11AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N