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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Structure of the Human G-quadruplex reveals a novel topology

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011k8p_A_BRU1_DA2NANNANT00.52BB16
021k8p_A_DA2_DG3BBBBB01670.20BB01
031k8p_A_DG3_DG4NANNANT00.39BB01
041k8p_A_DG4_DG5A-BAB01220.24AB01
051k8p_A_DG5_BRU6OPNOP19770.24OP19
061k8p_A_BRU6_DT7NANNANT01.25OP04
071k8p_A_DT7_DA8A-BAB04780.14AB04
081k8p_A_DA8_DG9NANNANT01.44IC02
091k8p_A_DG9_DG10BBBBB00590.25BB00
101k8p_A_DG10_DG11BBBBB00490.20BB00
111k8p_A_DG11_DT12NANNANT01.72OP19
121k8p_B_BRU13_DA14NANNANT00.60BB16
131k8p_B_DA14_DG15BBBBB00430.33BB00
141k8p_B_DG15_DG16NANNANT00.39BB15
151k8p_B_DG16_DG17BBBBB00280.31BB00
161k8p_B_DG17_BRU18NANNANT00.56OP19
171k8p_B_BRU18_DT19NANNANT01.36OP04
181k8p_B_DT19_DA20A-BAB05350.38AB05
191k8p_B_DA20_DG21NANNANT01.58OP13
201k8p_B_DG21_DG22NANNANT00.57IC06
211k8p_B_DG22_DG23miBBB15760.24BB15
221k8p_B_DG23_DT24BBBBB00190.38BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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