Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Recognition of the rotavirus mRNA 3' consensus by an asymmetric NSP3 homodimer

Results of the assignment of 16 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011knz_W_U2_G3NANNANT00.89OP10
021knz_W_G3_A4A-BAB05610.39AB05
031knz_W_A4_C5NANNANT01.23OP22
041knz_W_C5_C6NANNANT00.93OP04
051knz_X_U2_G3NANNANT00.86OP10
061knz_X_G3_A4A-BAB05660.40AB05
071knz_X_A4_C5NANNANT01.26OP22
081knz_X_C5_C6NANNANT00.95OP04
091knz_Y_U2_G3NANNANT00.88OP10
101knz_Y_G3_A4A-BAB05620.38AB05
111knz_Y_A4_C5NANNANT01.24OP22
121knz_Y_C5_C6NANNANT00.95OP04
131knz_Z_U2_G3NANNANT00.86OP10
141knz_Z_G3_A4A-BAB05530.41AB05
151knz_Z_A4_C5NANNANT01.26OP22
161knz_Z_C5_C6NANNANT00.96OP04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N