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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
NMR structure of a SRP19 binding domain in human SRP RNA

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011l1w_A_G1_G2AA1AA01860.24AA01
021l1w_A_G2_U3AAAAA00830.16AA00
031l1w_A_U3_G4AAAAA00770.19AA00
041l1w_A_G4_A5AAAAA00780.15AA00
051l1w_A_A5_C6AAAAA00670.18AA00
061l1w_A_C6_C7AAAAA00770.14AA00
071l1w_A_C7_U8AAAAA00720.13AA00
081l1w_A_U8_C9AAAAA00760.17AA00
091l1w_A_C9_C10AAAAA00760.11AA00
101l1w_A_C10_C11AAAAA00830.10AA00
111l1w_A_C11_G12AA1AA11500.30AA11
121l1w_A_G12_G13AA1AA05131.17AA05
131l1w_A_G13_G14NANNANT00.56OP09
141l1w_A_G14_A15BBBBB00470.55BB00
151l1w_A_A15_G16B-ABA08370.40BA08
161l1w_A_G16_C17AAAAA00110.33AA00
171l1w_A_C17_G18AA1AA01790.30AA01
181l1w_A_G18_G19AAAAA00780.15AA00
191l1w_A_G19_G20AAAAA00790.14AA00
201l1w_A_G20_G21AAAAA00750.17AA00
211l1w_A_G21_G22AAAAA00790.13AA00
221l1w_A_G22_A23AAAAA00790.17AA00
231l1w_A_A23_C24AAAAA00710.22AA00
241l1w_A_C24_C25AAAAA00750.18AA00
251l1w_A_C25_A26NANNANT00.62BA09
261l1w_A_A26_C27AAAAA00130.46AA00
271l1w_A_C27_C28AAAAA00770.15AA00
281l1w_A_C28_A29AA1AA01930.22AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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