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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
STRUCTURE OF RNA (5'-R(GP*CP*GP*GP*AP*CP*GP*C)-3') ANTI-PARALLEL RNA DUPLEX WITH TANDEM G:A MISMATCHES, NMR, MINIMIZED AVERAGE STRUCTURE

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011mis_A_G1_C2AAAAA00820.13AA00
021mis_A_C2_G3AAAAA00840.14AA00
031mis_A_G3_G4AAAAA00700.26AA00
041mis_A_G4_A5AA1AA01740.21AA01
051mis_A_A5_C6AAAAA00620.28AA00
061mis_A_C6_G7AAAAA00820.14AA00
071mis_A_G7_C8AAAAA00790.14AA00
081mis_B_G9_C10AAAAA00840.13AA00
091mis_B_C10_G11AAAAA00850.14AA00
101mis_B_G11_G12AAAAA00700.26AA00
111mis_B_G12_A13AA1AA01740.22AA01
121mis_B_A13_C14AAAAA00610.28AA00
131mis_B_C14_G15AAAAA00830.14AA00
141mis_B_G15_C16AAAAA00790.14AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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