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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
RIP-Radiation-damage Induced Phasing

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011n7a_A_A3_G4OPNOP15300.58OP15
021n7a_A_G4_G5AAAAA00860.28AA00
031n7a_A_G5_U6ZZZZZ01650.17ZZ01
041n7a_B_A3_G4OPNOP15440.54OP15
051n7a_B_G4_G5AAAAA00920.26AA00
061n7a_B_G5_U6ZZZZZ01680.15ZZ01
071n7a_C_A3_G4OPNOP15350.60OP15
081n7a_C_G4_G5AAAAA00900.28AA00
091n7a_C_G5_U6ZZZZZ01700.16ZZ01
101n7a_D_A3_G4OPNOP15330.58OP15
111n7a_D_G4_G5AAAAA00830.29AA00
121n7a_D_G5_U6ZZZZZ01610.19ZZ01
131n7a_E_A3_G4OPNOP15320.58OP15
141n7a_E_G4_G5AAAAA00850.28AA00
151n7a_E_G5_U6ZZZZZ01790.16ZZ01
161n7a_F_A3_G4OPNOP15240.59OP15
171n7a_F_G4_G5AAAAA00870.27AA00
181n7a_F_G5_U6ZZZZZ01660.18ZZ01
191n7a_G_A3_G4OPNOP15330.57OP15
201n7a_G_G4_G5AAAAA00870.27AA00
211n7a_G_G5_U6ZZZZZ01660.15ZZ01
221n7a_H_A3_G4OPNOP15310.61OP15
231n7a_H_G4_G5AAAAA00880.29AA00
241n7a_H_G5_U6ZZZZZ01640.19ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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