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Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the specificity domain of Ribonuclease P RNA

Results of the assignment of 265 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0011nbs_A_G86_C87AAAAA08590.32AA08
0021nbs_A_C87_G88AAAAA04850.18AA04
0031nbs_A_G88_A89AAAAA00670.26AA00
0041nbs_A_A89_G90AAAAA08230.22AA08
0051nbs_A_G90_C91NANNANT01.86OP16
0061nbs_A_C91_C92AAAAA00250.32AA00
0071nbs_A_C92_U93AAAAA00840.16AA00
0081nbs_A_U93_A94AAAAA00720.21AA00
0091nbs_A_A94_G95AAAAA00740.20AA00
0101nbs_A_G95_C96AAAAA00880.14AA00
0111nbs_A_C96_G97AAAAA08390.48AA08
0121nbs_A_G97_A98NANNANT01.01OP07
0131nbs_A_A98_A99NANNANT00.70OP17
0141nbs_A_A99_G100NANNANT02.47OP16
0151nbs_A_G100_U101NANNANT01.29OP13
0161nbs_A_U101_C102NANNANT01.28OP16
0171nbs_A_C102_A103AAAAA04190.50AA04
0181nbs_A_A103_U104AA1AA01520.17AA01
0191nbs_A_U104_A105AAAAA03560.36AA03
0201nbs_A_A105_A106AAAAA00460.44AA00
0211nbs_A_A106_G107NANNANT00.63AA04
0221nbs_A_G107_C108AAAAA00860.13AA00
0231nbs_A_C108_U109AAAAA00320.27AA00
0241nbs_A_U109_A110AAAAA00830.25AA00
0251nbs_A_A110_G111AAAAA00860.24AA00
0261nbs_A_G111_G112AAAAA00810.14AA00
0271nbs_A_G112_G113AAAAA00670.26AA00
0281nbs_A_G113_C114AAAAA00880.16AA00
0291nbs_A_C114_A115AAAAA00890.21AA00
0301nbs_A_A115_G116AAAAA00870.10AA00
0311nbs_A_G116_U117AAAAA00820.18AA00
0321nbs_A_U117_C118AA2AA12760.38AA12
0331nbs_A_C118_U119AAAAA00590.28AA00
0341nbs_A_U119_U120AAAAA00240.33AA00
0351nbs_A_U120_U121OPNOP04910.18OP04
0361nbs_A_U121_A122AAAAA00380.39AA00
0371nbs_A_A122_G123NANNANT00.83AA05
0381nbs_A_G123_A124AAAAA04370.45AA04
0391nbs_A_A124_G125NANNANT00.82AA00
0401nbs_A_G125_G126AAAAA00570.27AA00
0411nbs_A_G126_C127AAAAA08830.25AA08
0421nbs_A_C127_U128AAAAA00650.27AA00
0431nbs_A_U128_G129AAAAA00680.29AA00
0441nbs_A_G129_A130NANNANT01.23OP13
0451nbs_A_A130_C131NANNANT02.76IC04
0461nbs_A_C131_G132NANNANT01.11OP13
0471nbs_A_G132_G133AAAAA00690.24AA00
0481nbs_A_G133_C134NANNANT00.69IC04
0491nbs_A_C134_A135NANNANT01.39OP11
0501nbs_A_A135_G136AAAAA00820.17AA00
0511nbs_A_G136_G137AAAAA00720.16AA00
0521nbs_A_G137_A138AAAAA00680.29AA00
0531nbs_A_A138_A139AA1AA01560.30AA01
0541nbs_A_A139_A140NANNANT01.18IC03
0551nbs_A_A140_A141NANNANT00.58AA10
0561nbs_A_A141_A142AA1AA01470.53AA01
0571nbs_A_G166_A167NANNANT00.38ZZ01
0581nbs_A_A167_G168NANNANT01.56IC03
0591nbs_A_G168_U169NANNANT00.64OP15
0601nbs_A_U169_A170AAAAA00620.26AA00
0611nbs_A_A170_U171AA1AA05500.46AA05
0621nbs_A_U171_C172AAAAA00640.21AA00
0631nbs_A_C172_C173AAAAA00770.20AA00
0641nbs_A_C173_U174AAAAA00760.28AA00
0651nbs_A_U174_U175AAAAA00880.17AA00
0661nbs_A_U175_G176AAAAA00550.27AA00
0671nbs_A_G176_A177OPNOP03610.33OP03
0681nbs_A_A177_A178AAAAA09770.20AA09
0691nbs_A_A178_A179NANNANT00.99AA01
0701nbs_A_A179_G180NANNANT00.73OP01
0711nbs_A_G180_U181AAAAA00330.26AA00
0721nbs_A_U181_G182AA1AA10650.22AA10
0731nbs_A_G182_C183AAAAA08940.13AA08
0741nbs_A_C183_C184AA2AA12320.64AA12
0751nbs_A_C184_A185OPNOP01390.51OP01
0761nbs_A_A185_C186AAAAA00110.43AA00
0771nbs_A_C186_A187NANNANT00.84AA00
0781nbs_A_A187_G188AAAAA00180.46AA00
0791nbs_A_G188_U189OPNOP03810.30OP03
0801nbs_A_U189_G190AAAAA08510.28AA08
0811nbs_A_G190_A191ICLIC01230.47IC01
0821nbs_A_A191_C192NANNANT01.07OP10
0831nbs_A_C192_G193NANNANT02.08BB14
0841nbs_A_G193_A194NANNANT01.25OP17
0851nbs_A_A194_A195NANNANT00.59OP01
0861nbs_A_A195_G196AA1AA1060.58AA10
0871nbs_A_G196_U197NANNANT01.27AA11
0881nbs_A_U197_C198AAAAA08860.21AA08
0891nbs_A_C198_U199AAAAA00450.29AA00
0901nbs_A_U199_C200AAAAA00560.37AA00
0911nbs_A_G213_A214AAAAA00520.22AA00
0921nbs_A_A214_G215AAAAA00620.19AA00
0931nbs_A_G215_A216AAAAA00690.31AA00
0941nbs_A_A216_G217AAAAA00460.26AA00
0951nbs_A_G217_U218AAAAA00380.31AA00
0961nbs_A_U218_G219AAAAA09820.25AA09
0971nbs_A_G219_G220OPNOP04180.34OP04
0981nbs_A_G220_A221AA1AA01460.31AA01
0991nbs_A_A221_A222NANNANT00.74IC02
1001nbs_A_A222_C223NANNANT00.63OP15
1011nbs_A_C223_G224NANNANT01.97AB02
1021nbs_A_G224_C225NANNANT01.25OP05
1031nbs_A_C225_G226NANNANT01.63OP06
1041nbs_A_G226_G227AAAAA00730.23AA00
1051nbs_A_G227_U228AAAAA00410.20AA00
1061nbs_A_U228_A229NANNANT00.58IC03
1071nbs_A_A229_A230NANNANT02.54OP10
1081nbs_A_A230_A231NANNANT02.08OP19
1091nbs_A_A231_C232AAAAA00870.17AA00
1101nbs_A_C232_C233AAAAA08390.57AA08
1111nbs_A_C233_C234AAAAA00170.29AA00
1121nbs_A_C234_C235AAAAA00370.27AA00
1131nbs_A_C235_U236AAAAA00820.14AA00
1141nbs_A_U236_C237AAAAA08850.21AA08
1151nbs_A_C237_G238AAAAA00340.39AA00
1161nbs_A_G238_C239AAAAA00600.20AA00
1171nbs_A_C239_A240AAAAA00360.28AA00
1181nbs_B_G86_C87AAAAA04260.62AA04
1191nbs_B_C87_G88AAAAA00900.15AA00
1201nbs_B_G88_A89AAAAA00780.15AA00
1211nbs_B_A89_G90AAAAA00290.34AA00
1221nbs_B_G90_C91NANNANT00.77OP13
1231nbs_B_C91_C92AAAAA08860.19AA08
1241nbs_B_C92_U93AAAAA00130.37AA00
1251nbs_B_U93_A94AAAAA00910.20AA00
1261nbs_B_A94_G95AAAAA00610.29AA00
1271nbs_B_G95_C96AAAAA00590.25AA00
1281nbs_B_C96_G97NANNANT00.43AA00
1291nbs_B_G97_A98NANNANT00.90OP07
1301nbs_B_A98_A99NANNANT01.62OP14
1311nbs_B_A99_G100NANNANT01.34OP13
1321nbs_B_G100_U101NANNANT01.87OP01
1331nbs_B_U101_C102NANNANT01.19OP16
1341nbs_B_C102_A103AAAAA00270.50AA00
1351nbs_B_A103_U104AA1AA01940.15AA01
1361nbs_B_U104_A105NANNANT00.70AA12
1371nbs_B_A105_A106AAAAA00780.32AA00
1381nbs_B_A106_G107NANNANT00.75AA09
1391nbs_B_G107_C108AAAAA00870.27AA00
1401nbs_B_C108_U109AAAAA00350.25AA00
1411nbs_B_U109_A110AAAAA00730.21AA00
1421nbs_B_A110_G111AAAAA00690.23AA00
1431nbs_B_G111_G112AAAAA00830.20AA00
1441nbs_B_G112_G113AA1AA10400.39AA10
1451nbs_B_G113_C114AAAAA00900.16AA00
1461nbs_B_C114_A115AAAAA00840.22AA00
1471nbs_B_A115_G116AAAAA00690.22AA00
1481nbs_B_G116_U117AAAAA00390.38AA00
1491nbs_B_U117_C118AAAAA00320.56AA00
1501nbs_B_C118_U119AAAAA00380.27AA00
1511nbs_B_U119_U120AAAAA00620.28AA00
1521nbs_B_G125_G126AA2AA12740.43AA12
1531nbs_B_G126_C127AAAAA00760.21AA00
1541nbs_B_C127_U128AAAAA08860.29AA08
1551nbs_B_U128_G129AAAAA00420.41AA00
1561nbs_B_G129_A130NANNANT00.97OP13
1571nbs_B_A130_C131NANNANT01.64OP19
1581nbs_B_C131_G132NANNANT01.11OP13
1591nbs_B_G132_G133AAAAA08800.41AA08
1601nbs_B_G133_C134NANNANT00.50IC04
1611nbs_B_C134_A135NANNANT00.90OP01
1621nbs_B_A135_G136AAAAA00750.18AA00
1631nbs_B_G136_G137AAAAA00780.17AA00
1641nbs_B_G137_A138AAAAA00900.13AA00
1651nbs_B_A138_A139AAAAA00220.35AA00
1661nbs_B_A139_A140OPNOP08310.28OP08
1671nbs_B_A140_A141AAAAA04430.47AA04
1681nbs_B_A141_A142AAAAA00570.32AA00
1691nbs_B_A142_A143AAAAA08720.35AA08
1701nbs_B_A143_G144AAAAA00760.30AA00
1711nbs_B_G144_C145AAAAA08900.17AA08
1721nbs_B_C145_C146AAAAA00690.24AA00
1731nbs_B_C146_U147AAAAA00860.16AA00
1741nbs_B_U147_A148NANNANT00.46AA06
1751nbs_B_A148_C149NANNANT00.69OP15
1761nbs_B_C149_G150AAAAA08230.55AA08
1771nbs_B_G150_U151AAAAA00890.17AA00
1781nbs_B_U151_C152AAAAA00970.08AA00
1791nbs_B_C152_U153AAAAA00640.31AA00
1801nbs_B_U153_U154NANNANT00.36OP09
1811nbs_B_U154_C155NANNANT00.47OP20
1821nbs_B_C155_G156NANNANT00.59ZZ1S
1831nbs_B_G156_G157NANNANT00.45AA05
1841nbs_B_G157_A158AAAAA00720.25AA00
1851nbs_B_A158_U159AAAAA00720.21AA00
1861nbs_B_U159_A160NANNANT00.53IC02
1871nbs_B_A160_U161NANNANT00.89BB20
1881nbs_B_U161_G162NANNANT01.26OP16
1891nbs_B_G162_G163AA1AA10630.24AA10
1901nbs_B_G163_C164AAAAA00250.37AA00
1911nbs_B_C164_U165AA1AA01420.21AA01
1921nbs_B_U165_G166AAAAA08670.47AA08
1931nbs_B_G166_A167ZZZZZ01320.40ZZ01
1941nbs_B_A167_G168NANNANT01.60BB08
1951nbs_B_G168_U169NANNANT00.67OP15
1961nbs_B_U169_A170AAAAA00830.26AA00
1971nbs_B_A170_U171AAAAA04320.51AA04
1981nbs_B_U171_C172AAAAA00790.18AA00
1991nbs_B_C172_C173AAAAA00910.12AA00
2001nbs_B_C173_U174AAAAA00630.25AA00
2011nbs_B_U174_U175AAAAA00760.20AA00
2021nbs_B_U175_G176AAAAA08820.18AA08
2031nbs_B_G176_A177OPNOP03620.21OP03
2041nbs_B_A177_A178AAAAA09880.18AA09
2051nbs_B_A178_A179NANNANT00.87AA06
2061nbs_B_A179_G180NANNANT00.85OP01
2071nbs_B_G180_U181AAAAA00740.20AA00
2081nbs_B_U181_G182AA1AA10420.23AA10
2091nbs_B_G182_C183AAAAA00820.17AA00
2101nbs_B_C183_C184AA2AA12410.54AA12
2111nbs_B_C184_A185OPNOP01130.38OP01
2121nbs_B_A185_C186AAAAA00110.58AA00
2131nbs_B_C186_A187AAAAA00410.35AA00
2141nbs_B_A187_G188AAAAA08710.34AA08
2151nbs_B_G188_U189OPNOP04400.18OP04
2161nbs_B_U189_G190AAAAA00560.29AA00
2171nbs_B_G190_A191NANNANT00.42IC01
2181nbs_B_A191_C192NANNANT01.49BB14
2191nbs_B_C192_G193NANNANT01.85AA11
2201nbs_B_G193_A194NANNANT00.93OP13
2211nbs_B_A194_A195NANNANT01.33OP01
2221nbs_B_A195_G196AAAAA00500.26AA00
2231nbs_B_G196_U197AA2AA12720.29AA12
2241nbs_B_U197_C198AAAAA08870.17AA08
2251nbs_B_C198_U199AAAAA00780.21AA00
2261nbs_B_U199_C200AAAAA00810.15AA00
2271nbs_B_C200_A201AAAAA00820.16AA00
2281nbs_B_A201_C202AAAAA00780.20AA00
2291nbs_B_C202_U203AAAAA00690.26AA00
2301nbs_B_U203_A204AA2AA12780.31AA12
2311nbs_B_A204_G205AAAAA00830.21AA00
2321nbs_B_G205_A206OPNOP03200.48OP03
2331nbs_B_A206_A207AAAAA08680.29AA08
2341nbs_B_A207_A208AAAAA00660.26AA00
2351nbs_B_A208_U209AAAAA04170.58AA04
2361nbs_B_U209_G210AA1AA10560.33AA10
2371nbs_B_G210_G211AAAAA08250.40AA08
2381nbs_B_G211_U212AAAAA00710.21AA00
2391nbs_B_U212_G213AAAAA00920.15AA00
2401nbs_B_G213_A214AAAAA00800.18AA00
2411nbs_B_A214_G215AAAAA00800.14AA00
2421nbs_B_G215_A216AAAAA00680.25AA00
2431nbs_B_A216_G217AAAAA00800.19AA00
2441nbs_B_G217_U218AAAAA00720.21AA00
2451nbs_B_U218_G219AAAAA00810.24AA00
2461nbs_B_G219_G220OPNOP03550.49OP03
2471nbs_B_G220_A221AAAAA00400.30AA00
2481nbs_B_A221_A222ICLIC01660.43IC01
2491nbs_B_A222_C223OPNOP15140.46OP15
2501nbs_B_C223_G224NANNANT01.79AB02
2511nbs_B_G224_C225NANNANT01.49OP01
2521nbs_B_C225_G226NANNANT01.51AA13
2531nbs_B_G226_G227AAAAA08430.38AA08
2541nbs_B_G227_U228AAAAA00850.20AA00
2551nbs_B_U228_A229NANNANT00.50IC03
2561nbs_B_A229_A230NANNANT00.76OP21
2571nbs_B_A230_A231NANNANT01.99OP19
2581nbs_B_A231_C232AAAAA08860.22AA08
2591nbs_B_C232_C233AAAAA08230.59AA08
2601nbs_B_C233_C234AAAAA00860.19AA00
2611nbs_B_C234_C235AAAAA00490.30AA00
2621nbs_B_C235_U236AAAAA00750.21AA00
2631nbs_B_U236_C237AAAAA08710.16AA08
2641nbs_B_C237_G238AAAAA00280.40AA00
2651nbs_B_G238_C239AAAAA00180.35AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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Color by conformation group (pyramids)

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