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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Xenopus SMUG1, an anti-mutator uracil-DNA Glycosylase

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011oe6_E_DC281_DC282BB1BB16470.50BB16
021oe6_E_DC282_DC283BBBBB00180.28BB00
031oe6_E_DC283_DG284B12BB04160.26BB04
041oe6_E_DG284_DT285B12BB04480.34BB04
051oe6_E_DT285_DG286miBBB10630.34BB10
061oe6_E_DG286_DA287NANNANT00.60BA17
071oe6_E_DA287_DG288BBBBB00190.45BB00
081oe6_E_DG288_DT289B-ABA08460.56BA08
091oe6_E_DT289_DC290NANNANT00.59AA02
101oe6_E_DC290_DC291NANNANT00.48BA10
111oe6_E_DC291_DG292NANNANT01.09OP21
121oe6_F_DC293_DG294NANNANT01.04IC02
131oe6_F_DG294_DG295BBBBB00550.25BB00
141oe6_F_DG295_DA296B-ABA08520.41BA08
151oe6_F_DA296_DC297NANNANT00.19BA05
161oe6_F_DC297_DT298BBBBB00100.41BB00
171oe6_F_DA300_DC301BBBBB00200.39BB00
181oe6_F_DC301_DG302NANNANT00.33BB10
191oe6_F_DG302_DG303NANNANT00.62BB10
201oe6_F_DG303_DG304NANNANT00.43BB14

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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