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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of Smad3-MH1 bound to DNA at 2.4 A resolution

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011ozj_C_DT1001_DC1002BBBBB00540.40BB00
021ozj_C_DC1002_DA1003BBBBB00880.18BB00
031ozj_C_DA1003_DG1004B12BB04830.15BB04
041ozj_C_DG1004_DT1005BBBBB00730.30BB00
051ozj_C_DT1005_DC1006BBBBB00870.20BB00
061ozj_C_DC1006_DT1007BBBBB00900.19BB00
071ozj_C_DT1007_DA1008BB2BB07780.34BB07
081ozj_C_DA1008_DG1009BBBBB00770.20BB00
091ozj_C_DG1009_DA1010BBBBB00800.18BB00
101ozj_C_DA1010_DC1011BBwBB02580.25BB02
111ozj_C_DC1011_DA1012BBBBB00790.36BB00
121ozj_C_DA1012_DT1013BBwBB02590.32BB02
131ozj_C_DT1013_DA1014BBBBB00600.42BB00
141ozj_C_DA1014_DC1015BBwBB11870.10BB11
151ozj_D_DG2001_DT2002SYNBBS1490.27BBS1
161ozj_D_DT2002_DA2003BBBBB00880.21BB00
171ozj_D_DA2003_DT2004BBBBB00770.27BB00
181ozj_D_DT2004_DG2005B12BB04780.11BB04
191ozj_D_DG2005_DT2006BBBBB00700.29BB00
201ozj_D_DT2006_DC2007BBBBB00910.10BB00
211ozj_D_DC2007_DT2008BBBBB00870.21BB00
221ozj_D_DT2008_DA2009BB2BB07710.35BB07
231ozj_D_DA2009_DG2010BBBBB00710.22BB00
241ozj_D_DG2010_DA2011BBBBB00800.21BB00
251ozj_D_DA2011_DC2012BBBBB00800.22BB00
261ozj_D_DC2012_DT2013BBBBB00830.19BB00
271ozj_D_DT2013_DG2014BB2BB08660.33BB08
281ozj_D_DG2014_DA2015BBBBB00580.39BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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