Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
CRYSTAL STRUCTURE OF THE OXYTRICHA NOVA TELOMERE END-BINDING PROTEIN COMPLEXED WITH NONCOGNATE SSDNA GGGGTTTTGGCG

Results of the assignment of 33 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011ph4_G_DG1_DG2SYNBBS1860.21BBS1
021ph4_G_DG2_DG3SYNBB2S720.09BB2S
031ph4_G_DG3_DG4SYNBBS1860.23BBS1
041ph4_G_DG4_DT5BBBBB00620.47BB00
051ph4_G_DT5_DT6BBBBB00790.25BB00
061ph4_G_DT6_DT7miBBB20780.18BB20
071ph4_G_DT7_DT8NANNANT00.44IC06
081ph4_G_DT8_DG9OPNOP1S930.14OP1S
091ph4_G_DG9_DG10NANNANT00.51BB03
101ph4_G_DG10_DG11SYNBB1S720.30BB1S
111ph4_G_DG11_DG12SYNBBS1800.13BBS1
121ph4_D_DG1_DG2NANNANT01.72OP21
131ph4_D_DG2_DG3NANNANT00.83OP1S
141ph4_D_DG3_DG4NANNANT00.87OPS1
151ph4_D_DG4_DT5NANNANT00.53OP15
161ph4_D_DT5_DT6BB1BB16240.47BB16
171ph4_D_DT6_DT7NANNANT01.54OP20
181ph4_D_DT7_DT8NANNANT00.88OP21
191ph4_D_DT8_DG9NANNANT00.74IC01
201ph4_D_DG9_DG10NANNANT02.24OP17
211ph4_D_DG10_DC11NANNANT01.78OPS1
221ph4_D_DC11_DG12NANNANT00.82AB1S
231ph4_H_DG1_DG2SYNBBS1920.22BBS1
241ph4_H_DG2_DG3SYNBB2S860.06BB2S
251ph4_H_DG3_DG4SYNBBS1940.06BBS1
261ph4_H_DG4_DT5BBBBB00520.50BB00
271ph4_H_DT5_DT6BBBBB00760.26BB00
281ph4_H_DT6_DT7miBBB20900.17BB20
291ph4_H_DT7_DT8NANNANT00.50IC06
301ph4_H_DT8_DG9OPNOP1S850.13OP1S
311ph4_H_DG9_DG10NANNANT00.56BBS1
321ph4_H_DG10_DG11SYNBB1S710.31BB1S
331ph4_H_DG11_DG12SYNBBS1640.19BBS1

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N