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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

CRYSTAL STRUCTURE OF A 19 BASE PAIR COPY CONTROL RELATED RNA DUPLEX

Results of the assignment of 53 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011qc0_A_U11_A12AAAAA00960.11AA00
021qc0_A_A12_G13AAAAA00800.21AA00
031qc0_A_G13_C14AAAAA00900.16AA00
041qc0_A_C14_G15AAAAA00730.17AA00
051qc0_A_G15_G16AAAAA00900.17AA00
061qc0_A_G16_U17AAAAA00960.07AA00
071qc0_A_U17_G18AAAAA00910.10AA00
081qc0_A_G18_C19AAAAA00800.15AA00
091qc0_B_G20_C21AAAAA00910.11AA00
101qc0_B_C21_A22AAAAA00940.14AA00
111qc0_B_A22_C23AAAAA00850.14AA00
121qc0_B_C23_C24AAAAA00970.15AA00
131qc0_B_C24_G25AAAAA00910.14AA00
141qc0_B_G25_C26AAAAA00930.12AA00
151qc0_B_C26_U27AAAAA00900.12AA00
161qc0_B_U27_A28AAAAA00890.14AA00
171qc0_B_A28_C29AAAAA00890.15AA00
181qc0_C_G101_C102AAAAA00370.22AA00
191qc0_C_C102_A103AAAAA00870.11AA00
201qc0_C_A103_C104AAAAA08570.21AA08
211qc0_C_C104_C105AAAAA00660.18AA00
221qc0_C_C105_G106AAAAA04930.12AA04
231qc0_C_G106_U107AAAAA08680.20AA08
241qc0_C_U107_U108AAAAA00820.20AA00
251qc0_C_U108_G109AAAAA00780.15AA00
261qc0_C_G109_G110AAAAA00840.16AA00
271qc0_C_G110_U111AAAAA00740.25AA00
281qc0_C_U111_A112AAAAA04960.12AA04
291qc0_C_A112_G113AAAAA08870.13AA08
301qc0_C_G113_C114AAAAA00920.08AA00
311qc0_C_C114_G115AAAAA00850.18AA00
321qc0_C_G115_G116AAAAA00910.18AA00
331qc0_C_G116_U117AAAAA00920.14AA00
341qc0_C_U117_G118AAAAA00870.14AA00
351qc0_C_G118_C119AAAAA00390.12AA00
361qc0_D_G120_C121AAAAA03470.22AA03
371qc0_D_C121_A122AAAAA00910.15AA00
381qc0_D_A122_C123AAAAA00810.16AA00
391qc0_D_C123_C124AAAAA00900.21AA00
401qc0_D_C124_G125AAAAA00850.20AA00
411qc0_D_G125_C126AAAAA00920.12AA00
421qc0_D_C126_U127AAAAA00900.19AA00
431qc0_D_U127_A128AAAAA00690.17AA00
441qc0_D_A128_C129AAAAA08600.32AA08
451qc0_D_C129_C130AAAAA08860.20AA08
461qc0_D_C130_A131AAAAA00420.21AA00
471qc0_D_A131_A132AAAAA00370.23AA00
481qc0_D_A132_C133AAAAA00520.15AA00
491qc0_D_C133_G134AAAAA00840.13AA00
501qc0_D_G134_G135AAAAA00960.19AA00
511qc0_D_G135_U136AAAAA00940.13AA00
521qc0_D_U136_G137AAAAA00830.19AA00
531qc0_D_G137_C138AAAAA00780.25AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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