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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
INSIGHTS INTO EDITING FROM AN ILE-TRNA SYNTHETASE STRUCTURE WITH TRNA(ILE) AND MUPIROCIN

Results of the assignment of 74 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011qu2_T_G1_G2AAAAA00360.34AA00
021qu2_T_G2_G3AAAAA00740.32AA00
031qu2_T_G3_C4AAAAA08870.12AA08
041qu2_T_C4_U5AAAAA00720.20AA00
051qu2_T_U5_U6AAAAA00470.37AA00
061qu2_T_U6_G7NANNANT00.51AB04
071qu2_T_G7_U8NANNANT00.34OP11
081qu2_T_U8_A9NANNANT01.14IC04
091qu2_T_A9_G10NANNANT01.33OP07
101qu2_T_G10_C11AAAAA00230.35AA00
111qu2_T_C11_U12AAAAA00870.15AA00
121qu2_T_U12_C13AA1AA01910.18AA01
131qu2_T_C13_A14NANNANT00.62IC03
141qu2_T_A14_G15AA1AA01150.53AA01
151qu2_T_G15_G16NANNANT00.94OP06
161qu2_T_G16_U17NANNANT00.90AA01
171qu2_T_U17_G18NANNANT01.49OP06
181qu2_T_G18_G19NANNANT01.16AB02
191qu2_T_G19_U20NANNANT01.64OP17
201qu2_T_U20_U21NANNANT00.69ZZ01
211qu2_T_A21.A_G22NANNANT01.04AA11
221qu2_T_U21_A21.ANANNANT00.46OP13
231qu2_T_G22_A23AAAAA03700.22AA03
241qu2_T_A23_G24AAAAA08860.24AA08
251qu2_T_G24_C25AAAAA08800.27AA08
261qu2_T_C25_G26AAAAA00640.32AA00
271qu2_T_G26_C27AAAAA00750.23AA00
281qu2_T_C27_A28AAAAA00840.20AA00
291qu2_T_A28_C29AAAAA00820.24AA00
301qu2_T_C29_C30AAAAA00920.14AA00
311qu2_T_C30_C31AAAAA00900.17AA00
321qu2_T_C31_C32AAAAA00860.19AA00
331qu2_T_C32_U33NANNANT00.47AB04
341qu2_T_U33_G34NANNANT00.85OP21
351qu2_T_G34_A35NANNANT01.38OP16
361qu2_T_A35_U36NANNANT02.12OP15
371qu2_T_U36_A37NANNANT00.96OP21
381qu2_T_A37_A38NANNANT01.67OP17
391qu2_T_A38_G39AAAAA00310.43AA00
401qu2_T_G39_G40AAAAA00600.29AA00
411qu2_T_G40_G41AAAAA00850.14AA00
421qu2_T_G41_U42AAAAA00730.20AA00
431qu2_T_U42_G43AAAAA00890.18AA00
441qu2_T_G43_A44AAAAA00520.29AA00
451qu2_T_A44_G45NANNANT00.93IC04
461qu2_T_G45_G46NANNANT00.63IC03
471qu2_T_G46_U47NANNANT01.11OP12
481qu2_T_U47_C48NANNANT01.68BB10
491qu2_T_C48_G49NANNANT01.23OP05
501qu2_T_G49_G50AAAAA00630.23AA00
511qu2_T_G50_U51AAAAA00850.15AA00
521qu2_T_U51_G52AAAAA00450.20AA00
531qu2_T_G52_G53AA1AA01930.10AA01
541qu2_T_G53_U54AAAAA00600.27AA00
551qu2_T_U54_U55AAAAA00570.37AA00
561qu2_T_U55_C56OPNOP04930.14OP04
571qu2_T_C56_A57AAAAA00810.27AA00
581qu2_T_A57_A58NANNANT00.41IC02
591qu2_T_A58_G59NANNANT01.63OP05
601qu2_T_G59_U60AAAAA00180.48AA00
611qu2_T_U60_C61NANNANT01.49OP16
621qu2_T_C61_C62AAAAA00820.19AA00
631qu2_T_C62_A63AAAAA00970.12AA00
641qu2_T_A63_C64AAAAA00610.27AA00
651qu2_T_C64_U65AAAAA00830.19AA00
661qu2_T_U65_C66AAAAA00720.28AA00
671qu2_T_C66_A67AAAAA00850.15AA00
681qu2_T_A67_G68AA1AA01880.22AA01
691qu2_T_G68_G69AAAAA08160.43AA08
701qu2_T_G69_C70AAAAA00870.23AA00
711qu2_T_C70_C71AAAAA00900.12AA00
721qu2_T_C71_C72AA1AA01950.17AA01
731qu2_T_C72_A73AAAAA00550.32AA00
741qu2_T_A73_C74NANNANT00.94AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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