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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure of Androgen Receptor DNA-Binding Domain Bound to a Direct Repeat Response Element

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011r4i_C_DC1_DC2BBBBB00630.24BB00
021r4i_C_DC2_DA3BBBBB00480.43BB00
031r4i_C_DA3_DG4BBwBB02770.19BB02
041r4i_C_DG4_DA5BBBBB00710.25BB00
051r4i_C_DA5_DA6BBBBB00630.17BB00
061r4i_C_DA6_DC7BBBBB00630.20BB00
071r4i_C_DC7_DA8BBBBB00530.33BB00
081r4i_C_DA8_DT9BBwBB02420.34BB02
091r4i_C_DT9_DC10BBwBB02500.29BB02
101r4i_C_DC10_DA11BBBBB00210.34BB00
111r4i_C_DA11_DA12B12BB04520.28BB04
121r4i_C_DA12_DG13BBBBB00840.21BB00
131r4i_C_DG13_DA14BBBBB00600.37BB00
141r4i_C_DA14_DA15BBBBB00730.17BB00
151r4i_C_DA15_DC16BBwBB02840.17BB02
161r4i_C_DC16_DA17BBBBB00670.26BB00
171r4i_C_DA17_DG18BBBBB00140.35BB00
181r4i_D_DC19_DT20BBBBB00680.31BB00
191r4i_D_DT20_DG21BBBBB00620.31BB00
201r4i_D_DG21_DT22BBBBB00290.41BB00
211r4i_D_DT22_DT23BBBBB00660.30BB00
221r4i_D_DT23_DC24BBBBB00660.27BB00
231r4i_D_DC24_DT25BBBBB00550.29BB00
241r4i_D_DT25_DT26BBBBB00480.23BB00
251r4i_D_DT26_DG27B12BB04630.27BB04
261r4i_D_DG27_DA28BBBBB00650.18BB00
271r4i_D_DA28_DT29BBwBB02650.29BB02
281r4i_D_DT29_DG30BBwBB02710.27BB02
291r4i_D_DG30_DT31BBBBB00580.23BB00
301r4i_D_DT31_DT32BBwBB02710.27BB02
311r4i_D_DT32_DC33BBBBB00500.29BB00
321r4i_D_DC33_DT34BBwBB02350.30BB02
331r4i_D_DT34_DG35BBBBB00690.28BB00
341r4i_D_DG35_DG36BBBBB00250.27BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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