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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal Structure of the DNA binding domain of KorB in complex with the operator DNA

Results of the assignment of 128 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0011r71_E_DA.A1_BRU.A2BBBBB0190.41BB01
0021r71_E_BRU.A2_DT.A3BBBBB00460.36BB00
0031r71_E_DT.A3_DT.A4BBBBB00520.43BB00
0041r71_E_DT.A4_DT.A5BBBBB00800.24BB00
0051r71_E_DT.A5_DA.A6BBBBB01200.33BB01
0061r71_E_DA.A6_DG.A7A-BAB03390.32AB03
0071r71_E_DG.A7_DC.A8BB2BB07210.50BB07
0081r71_E_DC.A8_DG.A9BBBBB01600.29BB01
0091r71_E_DG.A9_DG.A10A-BAB03380.52AB03
0101r71_E_DG.A10_DC.A11B-ABA05270.35BA05
0111r71_E_DC.A11_DT.A12BBBBB00280.28BB00
0121r71_E_DT.A12_DA.A13BB2BB07490.36BB07
0131r71_E_DA.A13_DA.A14BBBBB00180.29BB00
0141r71_E_DA.A14_DA.A15BBBBB00170.25BB00
0151r71_E_DA.A15_DA.A16BBBBB01190.42BB01
0161r71_E_DA.A16_DG.A17NANNANT00.62AA04
0171r71_I_DC.B1_BRU.B2NANNANT00.46BB15
0181r71_I_BRU.B2_DT.B3BBBBB00400.45BB00
0191r71_I_DT.B3_DT.B4NANNANT00.46BA05
0201r71_I_DT.B4_DT.B5BBBBB01670.17BB01
0211r71_I_DT.B5_DA.B6BBBBB00330.35BB00
0221r71_I_DA.B6_DG.B7BBBBB00310.44BB00
0231r71_I_DG.B7_DC.B8BB2BB07180.46BB07
0241r71_I_DC.B8_DC.B9B-ABA05770.32BA05
0251r71_I_DC.B9_DG.B10BBBBB01330.36BB01
0261r71_I_DG.B10_DC.B11B-ABA05700.22BA05
0271r71_I_DC.B11_DT.B12A-BAB01630.36AB01
0281r71_I_DT.B12_DA.B13BB2BB07280.49BB07
0291r71_I_DA.B13_DA.B14BBBBB00240.48BB00
0301r71_I_DA.B14_DA.B15BBBBB00280.28BB00
0311r71_I_DA.B15_DA.B16BBBBB00490.39BB00
0321r71_I_DA.B16_BRU.B17B-ABA08510.51BA08
0331r71_F_DC.A1_BRU.A2BBBBB01110.45BB01
0341r71_F_BRU.A2_DT.A3BBBBB01330.35BB01
0351r71_F_DT.A3_DT.A4BBBBB00510.29BB00
0361r71_F_DT.A4_DT.A5BBBBB01420.23BB01
0371r71_F_DT.A5_DA.A6miBBB15540.34BB15
0381r71_F_DA.A6_DG.A7NANNANT00.59BA08
0391r71_F_DG.A7_DC.A8NANNANT00.46BA17
0401r71_F_DC.A8_DC.A9B-ABA05560.32BA05
0411r71_F_DC.A9_DG.A10A-BAB0180.35AB01
0421r71_F_DG.A10_DC.A11B-ABA05510.48BA05
0431r71_F_DC.A11_DT.A12A-BAB01620.30AB01
0441r71_F_DT.A12_DA.A13BB2BB07760.26BB07
0451r71_F_DA.A13_DA.A14BBBBB00660.27BB00
0461r71_F_DA.A14_DA.A15BBBBB00790.27BB00
0471r71_F_DA.A15_DA.A16BBBBB00240.28BB00
0481r71_F_DA.A16_BRU.A17NANNANT00.52AB03
0491r71_J_DA.B1_BRU.B2B-ABA05230.32BA05
0501r71_J_BRU.B2_DT.B3BBBBB01620.33BB01
0511r71_J_DT.B3_DT.B4BBBBB00460.26BB00
0521r71_J_DT.B4_DT.B5BBBBB00500.47BB00
0531r71_J_DT.B5_DA.B6BBBBB00540.33BB00
0541r71_J_DA.B6_DG.B7BBBBB00610.31BB00
0551r71_J_DG.B7_DC.B8BB2BB07410.42BB07
0561r71_J_DC.B8_DG.B9BBBBB01810.29BB01
0571r71_J_DG.B9_DG.B10BBBBB00440.38BB00
0581r71_J_DG.B10_DC.B11B-ABA05280.36BA05
0591r71_J_DC.B11_DT.B12BBBBB00190.30BB00
0601r71_J_DT.B12_DA.B13BB2BB07780.20BB07
0611r71_J_DA.B13_DA.B14BBBBB00120.34BB00
0621r71_J_DA.B14_DA.B15BBBBB0060.31BB00
0631r71_J_DA.B15_DA.B16BBBBB01450.16BB01
0641r71_J_DA.B16_DG.B17B-ABA05320.20BA05
0651r71_G_DA.A1_BRU.A2NANNANT00.30BB15
0661r71_G_BRU.A2_DT.A3BBBBB0080.44BB00
0671r71_G_DT.A3_DT.A4BBBBB01750.25BB01
0681r71_G_DT.A4_DT.A5BBBBB01570.23BB01
0691r71_G_DT.A5_DA.A6BBBBB00760.32BB00
0701r71_G_DA.A6_DG.A7B12BB04510.33BB04
0711r71_G_DG.A7_DC.A8NANNANT00.53BB04
0721r71_G_DC.A8_DG.A9B-ABA05150.32BA05
0731r71_G_DG.A9_DG.A10BBBBB0070.46BB00
0741r71_G_DG.A10_DC.A11B-ABA05100.43BA05
0751r71_G_DC.A11_DT.A12BBBBB00420.28BB00
0761r71_G_DT.A12_DA.A13BB2BB07850.20BB07
0771r71_G_DA.A13_DA.A14BBBBB00800.25BB00
0781r71_G_DA.A14_DA.A15BBBBB00890.26BB00
0791r71_G_DA.A15_DA.A16BBBBB00900.18BB00
0801r71_G_DA.A16_DG.A17NANNANT00.38BA05
0811r71_L_DC.B1_BRU.B2NANNANT00.45BA05
0821r71_L_BRU.B2_DT.B3BBBBB00500.31BB00
0831r71_L_DT.B3_DT.B4BBBBB00700.22BB00
0841r71_L_DT.B4_DT.B5BBBBB01520.37BB01
0851r71_L_DT.B5_DA.B6BBBBB00540.35BB00
0861r71_L_DA.B6_DG.B7BBBBB01700.24BB01
0871r71_L_DG.B7_DC.B8BB2BB07490.35BB07
0881r71_L_DC.B8_DC.B9B-ABA05660.38BA05
0891r71_L_DC.B9_DG.B10BBBBB00200.46BB00
0901r71_L_DG.B10_DC.B11B-ABA01210.33BA01
0911r71_L_DC.B11_DT.B12A-BAB01720.34AB01
0921r71_L_DT.B12_DA.B13BB2BB07580.28BB07
0931r71_L_DA.B13_DA.B14BBBBB00210.41BB00
0941r71_L_DA.B14_DA.B15BBBBB01720.17BB01
0951r71_L_DA.B15_DA.B16BBBBB01290.18BB01
0961r71_L_DA.B16_BRU.B17B-ABA05660.23BA05
0971r71_H_DC.A1_BRU.A2B-ABA05700.29BA05
0981r71_H_BRU.A2_DT.A3BBBBB01520.36BB01
0991r71_H_DT.A3_DT.A4BBBBB00780.23BB00
1001r71_H_DT.A4_DT.A5BBBBB00780.29BB00
1011r71_H_DT.A5_DA.A6BBBBB00410.31BB00
1021r71_H_DA.A6_DG.A7BBBBB00500.36BB00
1031r71_H_DG.A7_DC.A8BB2BB07580.37BB07
1041r71_H_DC.A8_DC.A9B-ABA01420.31BA01
1051r71_H_DC.A9_DG.A10A-BAB03610.43AB03
1061r71_H_DG.A10_DC.A11BBBBB01510.40BB01
1071r71_H_DC.A11_DT.A12NANNANT00.76BB16
1081r71_H_DT.A12_DA.A13BB2BB07820.25BB07
1091r71_H_DA.A13_DA.A14BBBBB00330.32BB00
1101r71_H_DA.A14_DA.A15BBBBB00280.26BB00
1111r71_H_DA.A15_DA.A16BBBBB00560.30BB00
1121r71_H_DA.A16_BRU.A17NANNANT00.50BB15
1131r71_K_DA.B1_BRU.B2B-ABA05630.26BA05
1141r71_K_BRU.B2_DT.B3BBBBB00120.35BB00
1151r71_K_DT.B3_DT.B4BBBBB00350.33BB00
1161r71_K_DT.B4_DT.B5miBBB10490.37BB10
1171r71_K_DT.B5_DA.B6BBBBB00430.29BB00
1181r71_K_DA.B6_DG.B7BBBBB00750.30BB00
1191r71_K_DG.B7_DC.B8BB2BB07660.32BB07
1201r71_K_DC.B8_DG.B9BBBBB00690.35BB00
1211r71_K_DG.B9_DG.B10BBBBB00370.46BB00
1221r71_K_DG.B10_DC.B11B-ABA05450.40BA05
1231r71_K_DC.B11_DT.B12A-BAB01670.32AB01
1241r71_K_DT.B12_DA.B13BB2BB07790.22BB07
1251r71_K_DA.B13_DA.B14BBBBB00890.21BB00
1261r71_K_DA.B14_DA.B15BBBBB00460.24BB00
1271r71_K_DA.B15_DA.B16BBBBB01670.15BB01
1281r71_K_DA.B16_DG.B17B-ABA0590.24BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N