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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
MG2+ BINDING TO THE ACTIVE SITE OF ECO RV ENDONUCLEASE: A CRYSTALLOGRAPHIC STUDY OF COMPLEXES WITH SUBSTRATE AND PRODUCT DNA AT 2 ANGSTROMS RESOLUTION

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011rvc_C_DA1_DA2SYNBBS1640.27BBS1
021rvc_C_DA2_DA3BBBBB00300.29BB00
031rvc_C_DA3_DG4BBBBB00520.27BB00
041rvc_C_DG4_DA5B-ABA16410.19BA16
051rvc_C_DA5_DT6AAAAA00700.24AA00
061rvc_D_DA7_DT8NANNANT00.50AA00
071rvc_D_DT8_DC9A-BAB01200.40AB01
081rvc_D_DC9_DT10BBBBB00700.18BB00
091rvc_D_DT10_DT11BBBBB00700.31BB00
101rvc_E_DA1_DA2SYNBBS1540.32BBS1
111rvc_E_DA2_DA3B-ABA05410.20BA05
121rvc_E_DA3_DG4BBBBB01400.33BB01
131rvc_E_DG4_DA5B-ABA13340.29BA13
141rvc_E_DA5_DT6AAAAA00890.19AA00
151rvc_F_DA7_DT8NANNANT00.47AA10
161rvc_F_DT8_DC9BBBBB01240.25BB01
171rvc_F_DC9_DT10BBBBB00420.23BB00
181rvc_F_DT10_DT11BBBBB01410.36BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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