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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011v3p_A_DG1_C382BBBBB01810.24BB01
021v3p_A_C382_DG3BBBBB00180.66BB00
031v3p_A_DG3_DA4B-ABA01280.32BA01
041v3p_A_DA4_DG5ICLIC04160.50IC04
051v3p_A_DG5_DA6NANNANT00.81IC05
061v3p_A_DA6_DG7B-ABA0590.44BA05
071v3p_A_DG7_DC8BBBBB00240.30BB00
081v3p_B_DG9_C3810BBBBB00700.33BB00
091v3p_B_C3810_DG11NANNANT00.86BA08
101v3p_B_DG11_DA12B-ABA01420.29BA01
111v3p_B_DA12_DG13ICLIC04560.34IC04
121v3p_B_DG13_DA14NANNANT00.91IC05
131v3p_B_DA14_DG15BBBBB00490.49BB00
141v3p_B_DG15_DC16B-ABA08840.25BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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