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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-ATP as the incoming nucleotide.

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011x9w_C_DG12_DG13BBBBB00590.35BB00
021x9w_C_DG13_DT14BBBBB00770.30BB00
031x9w_C_DA15_DG16BBBBB00670.30BB00
041x9w_C_DG16_DT17BBwBB02880.12BB02
051x9w_C_DT17_DG18BBwBB02790.18BB02
061x9w_C_DG18_DT19BBBBB00890.23BB00
071x9w_C_DT19_DG20BBBBB01180.49BB01
081x9w_C_DG20_DA21NANNANT00.40BB00
091x9w_D_DA5_DT6BBBBB00470.36BB00
101x9w_D_DT6_DC7BBBBB00510.29BB00
111x9w_D_DC7_DA8BBBBB00250.51BB00
121x9w_D_DA8_DC9BBBBB00850.23BB00
131x9w_D_DC9_DA10B12BB04900.14BB04
141x9w_D_DA10_DC11BBBBB00170.44BB00
151x9w_D_DC11_DT12B12BB04730.22BB04
161x9w_D_DT12_DA13BBBBB00930.21BB00
171x9w_D_DA13_DC14B12BB04840.21BB04
181x9w_D_DC14_DC15BBBBB00740.32BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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