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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal Structure of human DNA polymerase lambda in complex with a one nucleotide DNA gap

Results of the assignment of 72 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011xsl_B_DC1_DG2NANNANT00.34AB03
021xsl_B_DG2_DG3BBBBB00820.10BB00
031xsl_B_DG3_DC4B-ABA05480.36BA05
041xsl_B_DC4_DA5NANNANT01.40OP21
051xsl_B_DA5_DG6BBBBB00740.36BB00
061xsl_B_DG6_DC7B-ABA08780.26BA08
071xsl_B_DC7_DG8A-BAB01800.14AB01
081xsl_B_DG8_DC9B-ABA08610.35BA08
091xsl_B_DC9_DA10A-BAB01780.26AB01
101xsl_B_DA10_DC11BBBBB00690.25BB00
111xsl_C_DG1_DT2BBBBB00540.22BB00
121xsl_C_DT2_DG3BBBBB00880.16BB00
131xsl_C_DG3_DC4B-ABA05820.14BA05
141xsl_C_DC4_DG5A-BAB01430.24AB01
151xsl_C_DG5_DC6BBBBB00520.24BB00
161xsl_D_DG1_DC2A-BAB01280.39AB01
171xsl_D_DC2_DC3BBBBB00810.13BB00
181xsl_D_DC3_DG4BBBBB00820.26BB00
191xsl_F_DC1_DG2BBBBB00800.29BB00
201xsl_F_DG2_DG3BBBBB00850.14BB00
211xsl_F_DG3_DC4BBBBB00290.40BB00
221xsl_F_DC4_DA5NANNANT01.38OP21
231xsl_F_DA5_DG6BBBBB00750.28BB00
241xsl_F_DG6_DC7BBBBB00730.32BB00
251xsl_F_DC7_DG8BBBBB00810.31BB00
261xsl_F_DG8_DC9BBBBB00740.28BB00
271xsl_F_DC9_DA10B12BB04750.24BB04
281xsl_F_DA10_DC11BB1BB02770.19BB02
291xsl_G_DG1_DT2BB1BB16670.51BB16
301xsl_G_DT2_DG3BBBBB00950.13BB00
311xsl_G_DG3_DC4BBBBB00730.23BB00
321xsl_G_DC4_DG5BBBBB00810.22BB00
331xsl_G_DG5_DC6BBBBB00730.28BB00
341xsl_H_DG1_DC2BBBBB00730.23BB00
351xsl_H_DC2_DC3BBBBB00940.11BB00
361xsl_H_DC3_DG4BBBBB00680.32BB00
371xsl_J_DC1_DG2BBBBB00720.34BB00
381xsl_J_DG2_DG3BBBBB00830.13BB00
391xsl_J_DG3_DC4BBBBB00400.37BB00
401xsl_J_DC4_DA5NANNANT01.34OP21
411xsl_J_DA5_DG6BBBBB00810.29BB00
421xsl_J_DG6_DC7B12BB04150.36BB04
431xsl_J_DC7_DG8BBBBB00700.31BB00
441xsl_J_DG8_DC9BBBBB00780.26BB00
451xsl_J_DC9_DA10BBBBB00630.34BB00
461xsl_J_DA10_DC11BB1BB02800.11BB02
471xsl_K_DG1_DT2BBBBB00590.22BB00
481xsl_K_DT2_DG3BBBBB00950.11BB00
491xsl_K_DG3_DC4BBBBB00660.23BB00
501xsl_K_DC4_DG5BBBBB00730.27BB00
511xsl_K_DG5_DC6BBBBB00780.26BB00
521xsl_L_DG1_DC2BBBBB00590.25BB00
531xsl_L_DC2_DC3BBBBB00940.13BB00
541xsl_L_DC3_DG4BBBBB00680.29BB00
551xsl_N_DC1_DG2B12BB04920.15BB04
561xsl_N_DG2_DG3BBBBB00930.09BB00
571xsl_N_DG3_DC4BBBBB00290.36BB00
581xsl_N_DC4_DA5NANNANT01.33OP21
591xsl_N_DA5_DG6BBBBB00730.35BB00
601xsl_N_DG6_DC7B12BB04250.35BB04
611xsl_N_DC7_DG8BBBBB00630.32BB00
621xsl_N_DG8_DC9BBBBB00660.27BB00
631xsl_N_DC9_DA10BBBBB00710.32BB00
641xsl_N_DA10_DC11BBBBB00860.26BB00
651xsl_O_DG1_DT2BBBBB00770.17BB00
661xsl_O_DT2_DG3BBBBB00950.12BB00
671xsl_O_DG3_DC4BBBBB00410.25BB00
681xsl_O_DC4_DG5BBBBB00610.24BB00
691xsl_O_DG5_DC6BBBBB00540.26BB00
701xsl_P_DG1_DC2BB1BB16570.59BB16
711xsl_P_DC2_DC3BBBBB00900.16BB00
721xsl_P_DC3_DG4BBBBB00570.34BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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