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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-allyl Thymidine (T*)

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011y9f_A_DG1_DC2AAAAA00630.19AA00
021y9f_A_DC2_DG3AA1AA01950.08AA01
031y9f_A_DG3_DT4AAAAA00270.36AA00
041y9f_A_DT4_DA5AA1AA01850.24AA01
051y9f_A_DA7_DC8AAAAA00930.13AA00
061y9f_A_DC8_DG9AAAAA00880.20AA00
071y9f_A_DG9_DC10AAAAA00900.15AA00
081y9f_B_DG11_DC12AAAAA00860.16AA00
091y9f_B_DC12_DG13AAAAA00840.13AA00
101y9f_B_DG13_DT14AAAAA00860.20AA00
111y9f_B_DT14_DA15AAAAA00820.13AA00
121y9f_B_DA17_DC18AAAAA00780.14AA00
131y9f_B_DC18_DG19AAAAA00460.14AA00
141y9f_B_DG19_DC20AAAAA00790.16AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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