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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
STRUCTURE OF A B-DNA DODECAMER. CONFORMATION AND DYNAMICS

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
011bna_A_DC1_DG2B12BB04330.36BB04
021bna_A_DG2_DC3B-ABA05800.19BA05
031bna_A_DC3_DG4A-BAB01350.18AB01
041bna_A_DG4_DA5B12BB04150.21BB04
051bna_A_DA5_DA6BBBBB01670.19BB01
061bna_A_DA6_DT7B-ABA05690.20BA05
071bna_A_DT7_DT8BBBBB01430.28BB01
081bna_A_DT8_DC9BBBBB01680.25BB01
091bna_A_DC9_DG10BBBBB00770.42BB00
101bna_A_DG10_DC11BB2BB07700.31BB07
111bna_A_DC11_DG12BBBBB01540.38BB01
121bna_B_DC13_DG14BBBBB00480.23BB00
131bna_B_DG14_DC15B-ABA05590.19BA05
141bna_B_DC15_DG16A-BAB01630.25AB01
151bna_B_DG16_DA17BBBBB00840.21BB00
161bna_B_DA17_DA18BBBBB00880.18BB00
171bna_B_DA18_DT19BBBBB01650.20BB01
181bna_B_DT19_DT20BBBBB01680.18BB01
191bna_B_DT20_DC21BBBBB01790.14BB01
201bna_B_DC21_DG22BBBBB00150.31BB00
211bna_B_DG22_DC23B-ABA17900.18BA17
221bna_B_DC23_DG24B-ABA05380.40BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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