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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Flock House virus B2-dsRNA Complex (P4122)

Results of the assignment of 34 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012az2_C_G1_C2AAAAA00860.12AA00
022az2_C_C2_A3AAAAA00970.18AA00
032az2_C_A3_5BU4AAAAA00930.14AA00
042az2_C_5BU4_G5AAAAA00810.18AA00
052az2_C_G5_G6AAAAA00770.16AA00
062az2_C_G6_A7AAAAA00960.08AA00
072az2_C_A7_C8AAAAA00830.18AA00
082az2_C_C8_G9AAAAA00830.17AA00
092az2_C_G9_C10AAAAA00970.10AA00
102az2_C_C10_G11AAAAA00920.21AA00
112az2_C_G11_5BU12AAAAA00830.21AA00
122az2_C_5BU12_C13AAAAA00900.19AA00
132az2_C_C13_C14AAAAA00910.16AA00
142az2_C_C14_A15AAAAA00930.12AA00
152az2_C_A15_5BU16AAAAA00920.11AA00
162az2_C_5BU16_G17AAAAA00890.12AA00
172az2_C_G17_C18AAAAA00760.18AA00
182az2_D_G1_C2AAAAA08840.16AA08
192az2_D_C2_A3AAAAA00860.18AA00
202az2_D_A3_5BU4AAAAA00800.17AA00
212az2_D_5BU4_G5AAAAA00870.16AA00
222az2_D_G5_G6AAAAA00880.11AA00
232az2_D_G6_A7AAAAA00860.11AA00
242az2_D_A7_C8AAAAA00920.18AA00
252az2_D_C8_G9AAAAA00860.17AA00
262az2_D_G9_C10AAAAA00940.11AA00
272az2_D_C10_G11AAAAA00840.22AA00
282az2_D_G11_5BU12AAAAA00880.22AA00
292az2_D_5BU12_C13AAAAA00980.12AA00
302az2_D_C13_C14AAAAA00980.13AA00
312az2_D_C14_A15AAAAA00920.17AA00
322az2_D_A15_5BU16AAAAA00880.16AA00
332az2_D_5BU16_G17AAAAA00850.14AA00
342az2_D_G17_C18AAAAA00970.12AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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