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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEX

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012c4y_R_C2_A3AAAAA08850.14AA08
022c4y_R_A3_U4AAAAA00730.27AA00
032c4y_R_U4_G5AAAAA00900.14AA00
042c4y_R_G5_A6NANNANT00.96OP29
052c4y_R_A6_G7NANNANT00.78OP31
062c4y_R_G7_G8AAAAA00520.23AA00
072c4y_R_G8_A9AAAAA00690.23AA00
082c4y_R_A9_U10NANNANT00.58OP09
092c4y_R_U10_SUR11NANNANT00.46OP20
102c4y_R_SUR11_A12NANNANT01.30OP22
112c4y_R_A12_C13NANNANT00.63OP27
122c4y_R_C13_C14AAAAA00940.15AA00
132c4y_R_C14_C15AAAAA00850.24AA00
142c4y_R_C15_A16AAAAA00980.12AA00
152c4y_R_A16_U17AAAAA00840.17AA00
162c4y_R_U17_G18AAAAA00480.25AA00
172c4y_S_U4_G5AAAAA00820.26AA00
182c4y_S_G5_A6NANNANT00.87OP29
192c4y_S_A6_G7NANNANT00.80OP31
202c4y_S_G7_G8AAAAA00220.36AA00
212c4y_S_G8_A9AAwAA01260.33AA01
222c4y_S_A9_U10NANNANT00.62OP09
232c4y_S_U10_SUR11NANNANT00.47OP20
242c4y_S_SUR11_A12NANNANT01.28OP22
252c4y_S_A12_C13NANNANT00.51OP27
262c4y_S_C13_C14AAAAA00870.18AA00
272c4y_S_C14_C15AAAAA00480.30AA00
282c4y_S_C15_A16AAAAA00640.17AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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