Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Human Telomeric G-quadruplex DNA sequence (TTAGGGT)4 complexed with Flavonoid Quercetin

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012ms6_A_DT1_DT2NANNANT00.84IC02
022ms6_A_DT2_DA3NANNANT00.70BB00
032ms6_A_DA3_DG4BB2BB07700.23BB07
042ms6_A_DG4_DG5B12BB04390.38BB04
052ms6_A_DG5_DG6B-ABA17180.44BA17
062ms6_A_DG6_DT7NANNANT00.61IC04
072ms6_B_DT8_DT9NANNANT00.80OP12
082ms6_B_DT9_DA10NANNANT00.48AA10
092ms6_B_DA10_DG11NANNANT00.49BB16
102ms6_B_DG11_DG12BB2BB07170.42BB07
112ms6_B_DG12_DG13BB2BB07330.38BB07
122ms6_B_DG13_DT14NANNANT01.06BA08
132ms6_C_DT15_DT16NANNANT00.78IC04
142ms6_C_DT16_DA17B-ABA09490.37BA09
152ms6_C_DA17_DG18A-BAB05230.41AB05
162ms6_C_DG18_DG19BB2BB07320.32BB07
172ms6_C_DG19_DG20BBBBB00120.56BB00
182ms6_C_DG20_DT21NANNANT01.19BA08
192ms6_D_DT22_DT23NANNANT01.01AA08
202ms6_D_DT23_DA24NANNANT00.99OP08
212ms6_D_DA24_DG25BBBBB0180.47BB01
222ms6_D_DG25_DG26NANNANT00.60BB17
232ms6_D_DG26_DG27NANNANT00.56BA09
242ms6_D_DG27_DT28NANNANT01.18AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N