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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal Structure of NFkB, IRF7, IRF3 bound to the interferon-b enhancer

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012o61_E_DT1_DT2NANNANT01.96OP17
022o61_E_DT2_DG3NANNANT01.13IC05
032o61_E_DG3_DA4BBBBB00600.25BB00
042o61_E_DA4_DA5BB1BB02730.30BB02
052o61_E_DA5_DA6BBBBB00510.30BB00
062o61_E_DA6_DG7BB1BB02740.20BB02
072o61_E_DG7_DG8BB1BB02860.23BB02
082o61_E_DG8_DG9BBBBB00810.22BB00
092o61_E_DG9_DA10BB1BB02900.26BB02
102o61_E_DA10_DG11BBBBB00550.49BB00
112o61_E_DG11_DA12B12BB04580.33BB04
122o61_E_DA12_DA13BB1BB02820.19BB02
132o61_E_DA13_DG14BBBBB00500.29BB00
142o61_E_DG14_DT15BB1BB02660.26BB02
152o61_E_DT15_DG16BBBBB00680.44BB00
162o61_E_DG16_DA17BB1BB02660.33BB02
172o61_E_DA17_DA18BBBBB00500.43BB00
182o61_E_DA18_DA19BB1BB11810.26BB11
192o61_E_DA19_DG20BBBBB00430.31BB00
202o61_E_DG20_DT21BB1BB02860.16BB02
212o61_E_DT21_DG22BB1BB02680.41BB02
222o61_E_DG22_DG23BB1BB02280.37BB02
232o61_E_DG23_DG24BBBBB00830.29BB00
242o61_E_DG24_DA25BBBBB00870.25BB00
252o61_E_DA25_DA26B12BB04810.14BB04
262o61_E_DA26_DA27BBBBB00840.10BB00
272o61_E_DA27_DT28BB1BB02870.10BB02
282o61_E_DT28_DT29BBBBB00830.28BB00
292o61_E_DT29_DC30BB1BB02910.17BB02
302o61_E_DC30_DC31BBBBB00710.36BB00
312o61_E_DC31_DT32B12BB04700.24BB04
322o61_E_DT32_DC33BB2BB08630.51BB08
332o61_E_DC33_DT34BBBBB00680.36BB00
342o61_E_DT34_DG35NANNANT00.81BB00
352o61_E_DG35_DT36NANNANT01.17BB12
362o61_F_DC2_DA3NANNANT00.82BB11
372o61_F_DA3_DG4NANNANT00.95BB02
382o61_F_DG4_DA5BB2BB07180.38BB07
392o61_F_DA5_DG6BBBBB00720.26BB00
402o61_F_DG6_DG7BB2BB07680.32BB07
412o61_F_DG7_DA8BB1BB02780.19BB02
422o61_F_DA8_DA9BBBBB00690.26BB00
432o61_F_DA9_DT10BBBBB00950.13BB00
442o61_F_DT10_DT11BB1BB02950.07BB02
452o61_F_DT11_DT12BBBBB00690.20BB00
462o61_F_DT12_DC13BB1BB02820.17BB02
472o61_F_DC13_DC14BBBBB00750.41BB00
482o61_F_DC14_DC15BB2BB07810.26BB07
492o61_F_DC15_DA16BBBBB00620.52BB00
502o61_F_DA16_DC17NANNANT00.43BB05
512o61_F_DC17_DT18BB1BB02200.48BB02
522o61_F_DT18_DT19BB1BB02370.25BB02
532o61_F_DT19_DT20BBBBB00750.28BB00
542o61_F_DT20_DC21BBBBB00970.12BB00
552o61_F_DC21_DA22BBBBB00850.36BB00
562o61_F_DA22_DC23NANNANT00.54BB02
572o61_F_DC23_DT24BBBBB00680.24BB00
582o61_F_DT24_DT25BB1BB02660.20BB02
592o61_F_DT25_DC26BB1BB02520.29BB02
602o61_F_DC26_DT27BBBBB00730.30BB00
612o61_F_DT27_DC28BB1BB02480.24BB02
622o61_F_DC28_DC29BBBBB00700.39BB00
632o61_F_DC29_DC30miBBB12850.39BB12
642o61_F_DC30_DT31NANNANT00.48BB02
652o61_F_DT31_DT32BB1BB02620.26BB02
662o61_F_DT32_DT33BBBBB00700.31BB00
672o61_F_DT33_DC34BB1BB02920.15BB02
682o61_F_DC34_DA35BB1BB02540.44BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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