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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal Structure of IRF-3 bound to the PRDIII-I regulatory element of the human interferon-B enhancer

Results of the assignment of 62 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pi0_E_DC2_DA3AAAAA0080.49AA00
022pi0_E_DA3_DT4A-BAB01170.28AB01
032pi0_E_DT4_DA5BBBBB00770.20BB00
042pi0_E_DA5_DG6BBBBB00720.16BB00
052pi0_E_DG6_DG7NANNANT00.36BB15
062pi0_E_DG7_DA8NANNANT00.42BB00
072pi0_E_DA8_DA9BBBBB00500.18BB00
082pi0_E_DA9_DA10BBBBB00690.26BB00
092pi0_E_DA10_DA11B12BB04320.25BB04
102pi0_E_DA11_DC12NANNANT00.23BA05
112pi0_E_DC12_DT13AAAAA00290.43AA00
122pi0_E_DT13_DG14A-BAB01640.23AB01
132pi0_E_DG14_DA15BBBBB00790.22BB00
142pi0_E_DA15_DA16BBBBB00740.28BB00
152pi0_E_DA16_DA17B12BB04730.16BB04
162pi0_E_DA17_DG18BBBBB00530.23BB00
172pi0_E_DG18_DG19B-ABA05470.21BA05
182pi0_E_DG19_DG20A-BAB03830.29AB03
192pi0_E_DG20_DA21B12BB04760.20BB04
202pi0_E_DA21_DG22BBBBB00590.40BB00
212pi0_E_DG22_DA23BB2BB07810.19BB07
222pi0_E_DA23_DA24BBBBB01730.23BB01
232pi0_E_DA24_DG25B-ABA01200.24BA01
242pi0_E_DG25_DT26AAAAA00440.21AA00
252pi0_E_DT26_DG27A-BAB01250.24AB01
262pi0_E_DG27_DA28BBBBB00530.24BB00
272pi0_E_DA28_DA29BBBBB00680.34BB00
282pi0_E_DA29_DA30NANNANT00.34BB08
292pi0_E_DA30_DG31BBBBB00580.28BB00
302pi0_E_DG31_DT32BBBBB01820.23BB01
312pi0_E_DT32_DG33BBBBB01490.49BB01
322pi0_F_DC2_DA3BBBBB00330.78BB00
332pi0_F_DA3_DC4miBBB12770.40BB12
342pi0_F_DC4_DT5BB1BB16710.40BB16
352pi0_F_DT5_DT6BBBBB00180.28BB00
362pi0_F_DT6_DT7BBBBB01470.22BB01
372pi0_F_DT7_DC8BBBBB01870.12BB01
382pi0_F_DC8_DA9BBBBB00540.32BB00
392pi0_F_DA9_DC10NANNANT00.26BA09
402pi0_F_DC10_DT11NANNANT00.46AB03
412pi0_F_DT11_DT12BBBBB00820.22BB00
422pi0_F_DT12_DC13B-ABA17910.15BA17
432pi0_F_DC13_DT14NANNANT00.46BB01
442pi0_F_DT14_DC15BBBBB01640.28BB01
452pi0_F_DC15_DC16BBBBB00430.57BB00
462pi0_F_DC16_DC17miBBB12750.33BB12
472pi0_F_DC17_DT18NANNANT00.48BB16
482pi0_F_DT18_DT19BBBBB01750.23BB01
492pi0_F_DT19_DT20BBBBB00570.32BB00
502pi0_F_DT20_DC21BBBBB01750.18BB01
512pi0_F_DC21_DA22BBBBB00270.43BB00
522pi0_F_DA22_DG23miBBB12920.20BB12
532pi0_F_DG23_DT24BB1BB16540.52BB16
542pi0_F_DT24_DT25NANNANT00.45BB03
552pi0_F_DT25_DT26BBBBB00730.22BB00
562pi0_F_DT26_DT27BBBBB00170.25BB00
572pi0_F_DT27_DC28A-BAB03660.29AB03
582pi0_F_DC28_DC29NANNANT00.36BA09
592pi0_F_DC29_DT30A-BAB05530.34AB05
602pi0_F_DT30_DA31BBBBB00850.21BB00
612pi0_F_DA31_DT32BBBBB00630.29BB00
622pi0_F_DT32_DG33BBBBB0070.26BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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