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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Variant 4 of Ribonucleoprotein Core of the E. Coli Signal Recognition Particle

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
012pxe_B_G130_G131AAAAA00890.10AA00
022pxe_B_G131_G132AAAAA00580.25AA00
032pxe_B_G132_U133AAAAA00730.31AA00
042pxe_B_U133_C134AAAAA00910.17AA00
052pxe_B_C134_U135AAAAA00960.12AA00
062pxe_B_U135_G136AAAAA00790.13AA00
072pxe_B_G136_U137AAAAA08830.24AA08
082pxe_B_U137_U138AAAAA00940.17AA00
092pxe_B_U138_U139AAAAA00650.25AA00
102pxe_B_U139_A140NANNANT01.37OP17
112pxe_B_A140_C141AAAAA00110.37AA00
122pxe_B_C141_C142AAAAA00170.55AA00
132pxe_B_C142_A143NANNANT00.38OP06
142pxe_B_A143_G144NANNANT00.62OP30
152pxe_B_G144_G145AAAAA00300.30AA00
162pxe_B_G145_U146AAAAA00830.21AA00
172pxe_B_U146_C147NANNANT00.69AA10
182pxe_B_C147_A148NANNANT00.57AA07
192pxe_B_A148_G149AAAAA08320.51AA08
202pxe_B_G149_G150AAAAA00540.36AA00
212pxe_B_G150_U151AAAAA00780.36AA00
222pxe_B_U151_C152AAAAA00890.17AA00
232pxe_B_C152_C153AAAAA00750.25AA00
242pxe_B_C153_G154AAAAA00820.24AA00
252pxe_B_G154_A155OPNOP03920.11OP03
262pxe_B_A155_A156AAAAA08650.23AA08
272pxe_B_A156_A157AAAAA00130.38AA00
282pxe_B_A157_G158AAwAA05860.25AA05
292pxe_B_G158_G159NANNANT00.79AA11
302pxe_B_G159_A160AAAAA00480.28AA00
312pxe_B_A160_A161AAAAA00860.19AA00
322pxe_B_A161_G162AAAAA00430.44AA00
332pxe_B_G162_C163AAuAA12900.38AA12
342pxe_B_C163_A164AAAAA00820.18AA00
352pxe_B_A164_G165AAAAA00640.39AA00
362pxe_B_G165_C166AAAAA00700.28AA00
372pxe_B_C166_C167AAAAA00770.23AA00
382pxe_B_C167_A168AAAAA00770.27AA00
392pxe_B_A168_A169AAAAA00460.39AA00
402pxe_B_A169_G170AAAAA00870.12AA00
412pxe_B_G170_G171AAAAA00690.28AA00
422pxe_B_G171_C172AAAAA00630.26AA00
432pxe_B_C172_A173AAwAA01890.14AA01
442pxe_B_A173_G174AAAAA08920.13AA08
452pxe_B_G174_G175AAAAA00710.25AA00
462pxe_B_G175_U176AAAAA00730.26AA00
472pxe_B_U176_C177AAAAA00850.15AA00
482pxe_B_C177_C178AAAAA00400.24AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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